Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g2197 ATGGCATTAGAGGCTGTAGTTTTCCCACAAGATCCATTTACTTACGGTTGCCTAACAAAAGATGAAGAAGATCTTTTTGGAATCATCAGCAATAACTTAGATCATAATATCCTTTCAAATTGGGATTCTTCTTCTCCTTCAAATATTAAAGAGCAATGGAATTCACACTCTTCCCCAGAAACTTCCACTCTTCCTCCTTCCACTTTTGAAGCCACCACAACAATCACAGCCCCTCGACGGCGCAAACGACGACACACTGTGAATGCGAAAAACAAGGAGGAAATCGAGAGCCAGAGGATGACTCACATTGCAGTTGAGCGCAATCGAAGAAAACAGATGAATGAGTACCTTGATATCCTCAAATCCTTGATGCCTCCTTCTTATGTACAAAGGGGTGATCAAGCGTCAATAGTTGGCGGTGCAATTAACTTCTTGAAGGAGCTACAACAGCATCTACAATTCATGAAGGGACAAAAGAAAATAAACAAAGAAGCTCATGAAAATAGCTTCATTTCTTGTTCTTGTTCATCACAACCTTTGACTGAGTTTTTCATGTTTCCTCAATACTCTATGGATGCACGTCAGAACATCACGTGCTACCCTACCAAACATAATCAGTCACGTGCCATGGGAGATATAGAAGTGACTTTGGTTGATAGTCATGCGAATATAAAGATAATGTTGAAAAAACGACAAGGACAGGTTATGAAGATGGTTGCTGGGATTCAAAATCTTGGCTTCAACATTCTACACCTTAATGTTTCCAGTATGGATGATAATGTTCTTGTCTCGGTTAGTGCCAAGGTAGAAGAAGGGAGTCGACTAAACACAGTGGATGAAATTGCAGCTGCAGTCAATGAGCTATCACATAGAATTCAGGTGGAAGCTGCTGCTTGGACCTGA 903 0.4086 MALEAVVFPQDPFTYGCLTKDEEDLFGIISNNLDHNILSNWDSSSPSNIKEQWNSHSSPETSTLPPSTFEATTTITAPRRRKRRHTVNAKNKEEIESQRMTHIAVERNRRKQMNEYLDILKSLMPPSYVQRGDQASIVGGAINFLKELQQHLQFMKGQKKINKEAHENSFISCSCSSQPLTEFFMFPQYSMDARQNITCYPTKHNQSRAMGDIEVTLVDSHANIKIMLKKRQGQVMKMVAGIQNLGFNILHLNVSSMDDNVLVSVSAKVEEGSRLNTVDEIAAAVNELSHRIQVEAAAWT* 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g2197 300 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 97 148 IPR011598 GO:0046983
Mtr5g2197 300 SMART finulus 103 154 IPR011598 GO:0046983
Mtr5g2197 300 Pfam Helix-loop-helix DNA-binding domain 98 149 IPR011598 GO:0046983
Mtr5g2197 300 Gene3D - 88 166 IPR036638 GO:0046983
Mtr5g2197 300 PANTHER HELIX-LOOP-HELIX-LIKE PROTEIN 1 296 - -
Mtr5g2197 300 MobiDBLite consensus disorder prediction 44 68 - -
Mtr5g2197 300 PANTHER MAX DIMERIZATION, MAD 1 296 - -
Mtr5g2197 300 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 97 171 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g2197 Mtr-Chr5 28642992 28645357 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g2197 1 269 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 45.364 2.04e-72 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mtr5g2197 HLH 3.2e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g2197 - - ccaj:109795426 333.569
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g2197 5 28642992 28645357 Mtr5g2197 5 28642992 28645357 ECH
Mtr5g2197 5 28642992 28645357 Mtr3g3529 3 49124103 49126525 PCT