Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g2196 ATGGCTAGGATCCAAAGAAAGCTCTTCCCAACAGAACCTACCACAAACCAAACCTTAGATTGTTACGGCTTTTGTGACCCTTCATGTCCTTCAAATTGCTACACTAATACAAATTACTATTTCTCACCCCCACCACTAGAACACACAACACAAGTTAACCACGTTTCCTCTTACTTCATAATCCTCATTTCACTATTCTCATTGATTTTTATCATAATTGGTTTCTACGTGATCAAAGTAAAATGTTATAATGAGATGTGTGGTTGGAGAATTAATAACTCGGTTCGCTCTCAAACCGAGAATTCTGAAGAGTTTCTCAATGAAAACCAGGTTGATCGCGATCATAATCGCGATCACCCAGTCTGGCTTATTGCAACGGTTGGTTTGCAACAATCGATTATAAACTCTATTACGGTTTGCAAGTATAGGAAAAATGAAGGGTTAATTGAAGGAACGGAATGTTCGGTTTGTTTGAATGAGTTTCATGAAGATGAAACATTAAGACTATTGCCAAAGTGTAGCCATGCTTTTCACATTTCTTGTATTGATACTTGGTTGAGATCTCATACTAATTGCCCTCTATGTCGAGCTGGTATTGTCTCCAACAATGTTACTCCTGAAGTAACAATACCGAATTCGGAACAAGAAAATAACATTTTGGGAAGAAATCAAGAGACTCATTTGGAGAATCCTAGGAATGATCAAGAAGATGTCTTAAGCAACAATATTGTTATCAATGTGACATTTGAAACTAGGGTTGAAACAACCGGGGAATCAAGCGATGAATCGAATTACAAGGAGCAAATAATCGATGATCCAACGGTTACGAATGATGAGATACAAATTGAGATGGGTTTGGTTTCAACTGAACCTGGAAGCTATCATCAAATTAGTCCTTGGAAGCTTATTACTGAAAAAAATAGCAAATCAACACGTCGTTCTCCAATTGAAGAGCGTTTACACGTAAAGCCAATAGCTATGAAAAAGTTTTTCCCTTTACACCAAAGAAAGGGTTTTAAAAAAAGATACGTGACTGCAGTTTGGAGCACAACGTCATAG 1059 0.373 MARIQRKLFPTEPTTNQTLDCYGFCDPSCPSNCYTNTNYYFSPPPLEHTTQVNHVSSYFIILISLFSLIFIIIGFYVIKVKCYNEMCGWRINNSVRSQTENSEEFLNENQVDRDHNRDHPVWLIATVGLQQSIINSITVCKYRKNEGLIEGTECSVCLNEFHEDETLRLLPKCSHAFHISCIDTWLRSHTNCPLCRAGIVSNNVTPEVTIPNSEQENNILGRNQETHLENPRNDQEDVLSNNIVINVTFETRVETTGESSDESNYKEQIIDDPTVTNDEIQIEMGLVSTEPGSYHQISPWKLITEKNSKSTRRSPIEERLHVKPIAMKKFFPLHQRKGFKKRYVTAVWSTTS* 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g2196 352 ProSiteProfiles Zinc finger RING-type profile. 154 196 IPR001841 -
Mtr5g2196 352 CDD RING-H2_EL5_like 153 196 - -
Mtr5g2196 352 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 5 343 IPR044675 -
Mtr5g2196 352 SMART ring_2 154 195 IPR001841 -
Mtr5g2196 352 Pfam Ring finger domain 153 196 IPR001841 -
Mtr5g2196 352 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 129 204 IPR013083 -
Mtr5g2196 352 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 5 343 - -
Mtr5g2196 352 SUPERFAMILY RING/U-box 144 202 - -
Mtr5g2196 352 SMART FANCL_C_2 150 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g2196 Mtr-Chr5 28611680 28613143 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g2196 1 269 C3H Transcription Factor Family AT1G72220 42.088 8.23e-64 206
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g2196 - - mtr:MTR_5g064890 714.916
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g2196 5 28611680 28613143 Mtr5g2196 5 28611680 28613143 ECH