Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g2168 ATGGCTTATCCACATTATCGATCACAATTTGGAGACACAACATTCACTAAGGTTTTTGTTGGAGGACTAGCTTGGGAAACTCCAACTGATGAAATGAGAACATATTTTGAACAATTTGGTGACATACTTGAAGCTGTCATTATCACTGATAAGAACACAGGAAAATCTAAAGGATACGGATTTGTAACATTTCGTGATCCAGAATCAGCTAGAAGGGCTTGTGCTGATCCAAACCCAGTAATTGATGGAAGAAGAGCTAATTGTAACATTGCTTCTCTTGGACGTCCTAGACCATCCCCACCAAGAGGGAGGGGTACATATCAAGGTGGGGGTGTGGGGACAGGAGCAGCAGCGGCGTACGGCGGTGTTCCGGCAGGAGGGCCACCACAAATGGCAGCAGGAGCAGCAACAGCTCCAGTAATGTACCAACCATATGGCTACCCTACCTACACTCCTGAATACGGGTACCCTCAAGCAACAATGTATAACCCACAGATTCAGCAAGCACAATACTATCAACAACTTTATGGACCATCATCTTCAACAATGGGTTCACCATATTATTATGGCTATTCTATGCAAGCAGCAGCACCAAGGGGTACATTTTCAACACCCCAACCACATCGCATACAAGCTGGACCATCCTATCTATACTACCCTACTACACCAATGGAAGGAGCTTCTTTCTCTGCTGCAGCATATCGTCCACTTCAACAACCATTAATAAGGCAACCTTCTCCTACCCCTTCTCCTAGTGATTCACAGACTCAGCAACGTACCTCATCAGAGACAGCATCTGGAGTAGTTATAACTTCGGAAAGTTCAAATACTCAAGGGAAGAACAACAACTAA 852 0.4472 MAYPHYRSQFGDTTFTKVFVGGLAWETPTDEMRTYFEQFGDILEAVIITDKNTGKSKGYGFVTFRDPESARRACADPNPVIDGRRANCNIASLGRPRPSPPRGRGTYQGGGVGTGAAAAYGGVPAGGPPQMAAGAATAPVMYQPYGYPTYTPEYGYPQATMYNPQIQQAQYYQQLYGPSSSTMGSPYYYGYSMQAAAPRGTFSTPQPHRIQAGPSYLYYPTTPMEGASFSAAAYRPLQQPLIRQPSPTPSPSDSQTQQRTSSETASGVVITSESSNTQGKNNN* 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g2168 283 PANTHER GEO13361P1-RELATED 1 271 - -
Mtr5g2168 283 SUPERFAMILY RNA-binding domain, RBD 9 115 IPR035979 GO:0003676
Mtr5g2168 283 PANTHER - 1 271 - -
Mtr5g2168 283 MobiDBLite consensus disorder prediction 248 283 - -
Mtr5g2168 283 SMART rrm1_1 17 89 IPR000504 GO:0003723
Mtr5g2168 283 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 93 IPR000504 GO:0003723
Mtr5g2168 283 MobiDBLite consensus disorder prediction 234 283 - -
Mtr5g2168 283 Gene3D - 3 113 IPR012677 -
Mtr5g2168 283 CDD RRM_RBM24_RBM38_like 16 91 - -
Mtr5g2168 283 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 75 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g2168 Mtr-Chr5 28164906 28170624 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g2168 12 92 C2H2 Transcription Factor Family AT2G19380 39.506 3.45e-15 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g2168 K25006 - gmx:100787086 361.303
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g2168 5 28164906 28170624 Mtr5g2168 5 28164906 28170624 ECH