Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g2160 ATGGCTGATTCACTCACAGTTAATGTTGATTCCTCACCTAAGCTTGAATTATATGCTAAACAAGAAAAAAATATCAGCTATGAGACTGAACACTCTCCATCTAGTATCCAAAAGGCTCTTGCTGAATTTGTGGGTACATACATTCTTATATTTGCTGGTTGTGGGGCTGCTCTTGTCAACGAGAAGTTACCAATCACAGTAGTTGGCATAGCAGTTGTTTCAGGTTTAGCTTTAACCGTCGCAATATATTCGGTCGGCCATGTCTCTGGTGCTCATTTCAATCCCTCTGTCACAATTGCCTTGGCCGTTGTCCAAAAAATTCACTTCAAACTTGTGCCCGTTTATGTGGTATGTCAGTTGATGGGTGCTACACTGGCCACTCTGACCCTCAAAGTGTTGTATCATGACAAGGTGGAAATTGGTGTAGCATTGACCCAATTTTCAAACCCAACTTCTTATCTTGAAGCATTGGTTTGGGAATCCATAATCACTTTCATATTGGTGCTAACTATTTGTGGTGTTGCCACTGATCACAGAGGGAGCAAAGATCTTGCTGGAGTTGCAATAGGAATTTCAGTTCTGATTAATATCATCATTGCCGGGCCTACCACGGGAGCTTCGATGAATCCAGCAAGGAGTTTAGGTCCTGCCATAGTATCAGGCAATTACAAAAACATTTGGGTTTATATCATAGGACCAACTATTGGAGCAGTCTTTGCAACTGTGCTTTACACATTCCTAAGAGTAACAAAACCAGCTCAACCAGAACCAGAATCATATCATGTCTGA 789 0.4157 MADSLTVNVDSSPKLELYAKQEKNISYETEHSPSSIQKALAEFVGTYILIFAGCGAALVNEKLPITVVGIAVVSGLALTVAIYSVGHVSGAHFNPSVTIALAVVQKIHFKLVPVYVVCQLMGATLATLTLKVLYHDKVEIGVALTQFSNPTSYLEALVWESIITFILVLTICGVATDHRGSKDLAGVAIGISVLINIIIAGPTTGASMNPARSLGPAIVSGNYKNIWVYIIGPTIGAVFATVLYTFLRVTKPAQPEPESYHV* 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g2160 262 TIGRFAM MIP: MIP family channel proteins 41 244 IPR000425 GO:0015267|GO:0016020|GO:0055085
Mtr5g2160 262 CDD MIP 37 247 IPR000425 GO:0015267|GO:0016020|GO:0055085
Mtr5g2160 262 PANTHER MAJOR INTRINSIC PROTEIN 1 259 - -
Mtr5g2160 262 Gene3D Glycerol uptake facilitator protein. 4 259 IPR023271 -
Mtr5g2160 262 PANTHER AQUAPORIN NIP2-1 1 259 IPR034294 -
Mtr5g2160 262 ProSitePatterns MIP family signature. 92 100 IPR022357 -
Mtr5g2160 262 PRINTS Major intrinsic protein family signature 37 56 IPR000425 GO:0015267|GO:0016020|GO:0055085
Mtr5g2160 262 PRINTS Major intrinsic protein family signature 74 98 IPR000425 GO:0015267|GO:0016020|GO:0055085
Mtr5g2160 262 PRINTS Major intrinsic protein family signature 111 130 IPR000425 GO:0015267|GO:0016020|GO:0055085
Mtr5g2160 262 PRINTS Major intrinsic protein family signature 159 177 IPR000425 GO:0015267|GO:0016020|GO:0055085
Mtr5g2160 262 PRINTS Major intrinsic protein family signature 190 212 IPR000425 GO:0015267|GO:0016020|GO:0055085
Mtr5g2160 262 PRINTS Major intrinsic protein family signature 227 247 IPR000425 GO:0015267|GO:0016020|GO:0055085
Mtr5g2160 262 Pfam Major intrinsic protein 32 244 IPR000425 GO:0015267|GO:0016020|GO:0055085
Mtr5g2160 262 SUPERFAMILY Aquaporin-like 32 256 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g2160 Mtr-Chr5 28069694 28071909 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g2160 32 259 Major Intrinsic Protein MIP AT5G37820 47.881 7.86e-67 208
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g2160 K09874 - gmx:100798380 382.489