Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g2144 ATGGCAATGAAAACCAAAAGCAACAAGGTGGGAAATGAATTTGGTTGTGGTTTCATGGAGAGGATTTTCAATCTCAAAAGTCCTAGGCTAAGAAACTCATTAGTTCATTCCCTACCAATGAAGGGTAACAACATTGATCATGTCAAAAATGAAGCAAAGTTGTTTCCAAATAAAGAACCAAAGGTTCCACAAAAAATTTCCAATGAAAATCGGAAGCGTAGTTCAGATGCTACTGCAAGAAGCTCGACATCATCATCCTCTGGTGCTAGTTCAACCCTTAAAAGGGTTGAACAAAACCATAATACAGATGATGATGTCAAGCTTCAAATAGAATCAGCGCGAAATTCTTTACAACTTGCTAGAATAAGCACTATTCGCACGCGCGACAACAAGAGCAACAAGTCCATAACCAAAGACTTTTCTCCCTTGAAACTCACTGGAAACTTGCTTGTGAATAACACTCCAAGAAGAAAGAGTGTTGATAGTTTACCTAAGCATTTAGAGTTAAACTCAGTTTCAAGTTTTTACAATGGTAATAATAATGGAAGGAAAGTGGTTATGGGGAATATTATGAGGAAGAATAGTAATGAACTTGCACAGTTTCTAAGTCAAAGGCACAATATTGCAGACCCTGAAGTGTTGAAATCAATGGGAAATGAAGCATACAAAAAGGGTAAGTTTGAAGAGGCTTTGGCTTTGTATGACAAAGCAATTGCTATTGATTCAAATAAGGCAACTTATCATTGCAATAAGAGTGCTGCTTTGATTGGATTAGGAAGGTTTCAAGAAGCAATTATTGAGTGTGAGGAATCTATTCGGTTGGATCCTTCTTATAACAGAGCTCACAATCGTTTGGCAACAATATATTTCAGATTAGGAGATGTAGAAAAGGCACTGGATTGCAACCGATCAACCTCAAATGTTGACTCTGTGCTTGCTTTTCAAGCTCAGGCTCTACAAAATCACCTGAAGAAATGCATAGAAGCTAGGAAATTCAATGAATGGAGTGTTGTACTAAAGGAAACACAGTCTGCATTATCCTTAGGTGCCGATTCAGCTCCACAGATCTATGCTTTACAAACCGAAGCCTTGCTGAAGCTCGTAAGGTACCAAGAGGCATATGCTGTGTATGACAACATGCCAAAATTTTCAGATGATTGGTGTAACAAGATATTTGGTATGGCTACTAGTGCTTACCTGTCGATGATAAGCGCACTGGTTTACCTAGCATCCGGCAGGTTTGAGGAAGCTGTGAAAACATCTCAGCAAGCAGATAGAGTTGATCCAAGCAACAGAGAGGTAAATGCAGTGTTAAGGAGAGCCAAAGCAGTAACATCATCTAGAATGAGTGGAAACTTACTCTTCAAGGCATCAAAATTCATGGAAGCATGTGCAGTATACAATGAAGGACTAGATCATGATCCACACAACTCAGTTCTGTTATGCAACAGAGCAGCGTGTCGTTCTAAGCTAGGGCAGTATGAAAAAGCAATTGAAGATTGTGATGCTGCACTTATGCTTAATCCATGTTATAGCAAAGCAAGATTAAGGAGGGCCTATTGTAATGCCAAGTTGGAACGATGGGAAGTTGCCATTCAAGACTACGAAATGTTGATAAGAGAAAAGCCAGGGGATGAAGAAGTGGCAAGGGCTTTGTTTGAGGCTCGGCTCCAACTCAAGATGCTACGTGGTGAAGATATTAAGGATTTAAAATTTGGTTCAAATTTGGTTTTCATCTCAAGTAATGATCGTTTCAGACATTATGTAACCTCGCCTGGTATGGCTGTTGTGCTCTTCAGTAACAAGGGAACACACAAGCAAGTGTCGATGGTGTTGGAACAAACCAGCAAGAGATTTCCATCTGTTAATTTCCTCAAGGTGGAGATTGAAGACCATCCCTACTTGGCAAAATCAGAAGGTGTAAGCTCATTCCCAGCTTTCAAAATATACAAAAATGGATCAAGAGTTAAAGAGATTTCCGGCAACAACCACGAGTTCTTAGAAAAATCGGTTAAATTCTATAGCAGCTGA 2031 0.3949 MAMKTKSNKVGNEFGCGFMERIFNLKSPRLRNSLVHSLPMKGNNIDHVKNEAKLFPNKEPKVPQKISNENRKRSSDATARSSTSSSSGASSTLKRVEQNHNTDDDVKLQIESARNSLQLARISTIRTRDNKSNKSITKDFSPLKLTGNLLVNNTPRRKSVDSLPKHLELNSVSSFYNGNNNGRKVVMGNIMRKNSNELAQFLSQRHNIADPEVLKSMGNEAYKKGKFEEALALYDKAIAIDSNKATYHCNKSAALIGLGRFQEAIIECEESIRLDPSYNRAHNRLATIYFRLGDVEKALDCNRSTSNVDSVLAFQAQALQNHLKKCIEARKFNEWSVVLKETQSALSLGADSAPQIYALQTEALLKLVRYQEAYAVYDNMPKFSDDWCNKIFGMATSAYLSMISALVYLASGRFEEAVKTSQQADRVDPSNREVNAVLRRAKAVTSSRMSGNLLFKASKFMEACAVYNEGLDHDPHNSVLLCNRAACRSKLGQYEKAIEDCDAALMLNPCYSKARLRRAYCNAKLERWEVAIQDYEMLIREKPGDEEVARALFEARLQLKMLRGEDIKDLKFGSNLVFISSNDRFRHYVTSPGMAVVLFSNKGTHKQVSMVLEQTSKRFPSVNFLKVEIEDHPYLAKSEGVSSFPAFKIYKNGSRVKEISGNNHEFLEKSVKFYSS* 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g2144 676 Gene3D Tetratricopeptide repeat domain 209 563 IPR011990 GO:0005515
Mtr5g2144 676 PANTHER 43KDA POSTSYNAPTIC PROTEIN-RELATED 1 675 - -
Mtr5g2144 676 SUPERFAMILY Thioredoxin-like 526 668 IPR036249 -
Mtr5g2144 676 MobiDBLite consensus disorder prediction 77 96 - -
Mtr5g2144 676 ProSiteProfiles TPR repeat profile. 398 431 IPR019734 GO:0005515
Mtr5g2144 676 MobiDBLite consensus disorder prediction 52 76 - -
Mtr5g2144 676 SUPERFAMILY TPR-like 210 433 IPR011990 GO:0005515
Mtr5g2144 676 CDD TRX_family 585 672 - -
Mtr5g2144 676 ProSiteProfiles TPR repeat profile. 211 244 IPR019734 GO:0005515
Mtr5g2144 676 Pfam Tetratricopeptide repeat 255 299 - -
Mtr5g2144 676 Pfam Thioredoxin 582 669 IPR013766 -
Mtr5g2144 676 SUPERFAMILY TPR-like 450 560 IPR011990 GO:0005515
Mtr5g2144 676 SMART tpr_5 444 477 IPR019734 GO:0005515
Mtr5g2144 676 SMART tpr_5 398 431 IPR019734 GO:0005515
Mtr5g2144 676 SMART tpr_5 478 511 IPR019734 GO:0005515
Mtr5g2144 676 SMART tpr_5 211 244 IPR019734 GO:0005515
Mtr5g2144 676 SMART tpr_5 279 312 IPR019734 GO:0005515
Mtr5g2144 676 SMART tpr_5 512 545 IPR019734 GO:0005515
Mtr5g2144 676 SMART tpr_5 245 278 IPR019734 GO:0005515
Mtr5g2144 676 Gene3D Glutaredoxin 570 675 - -
Mtr5g2144 676 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 1 675 IPR044534 -
Mtr5g2144 676 Pfam Tetratricopeptide repeat 480 509 IPR001440 GO:0005515
Mtr5g2144 676 MobiDBLite consensus disorder prediction 52 106 - -
Mtr5g2144 676 Pfam TPR repeat 218 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g2144 Mtr-Chr5 27758472 27762659 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g2144 K09527 - gmx:100791862 912.524
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g2144 5 27758472 27762659 Mtr5g2144 5 27758472 27762659 ECH
Mtr5g2144 5 27758472 27762659 Mtr3g2325 3 37022185 37026097 PCT