Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g2143 ATGACTAACCAGAATATGTTGGGAAAGTCACGTGTGATTGTGAATGAGAAGATATTGGAATTAGCAATGTCGATTTCAAACTCTAATGTTTTACCAAGAACTTCAATGCCTGAATTAATGGCTTTGTTTGATGGGCTTTTAGGCCAGCGCAAAAACAATCTCATTAAGCCTTTGGAAGATGATAATGATCACAAAGGAGCAACTAAAGTTAACGCGTGGATTGATTCCATGAGAGCTTCATCTCCTACTCGAACCAGACACGATTCAGAAAATCGTGACCAGACTCATTGGACTCTTTTCCATCCTTCTGCGTTGAACATGTTCAGTAAAATAATGTACAATACAAATGGGAAACAAATTGTTGTTTTTCTTGACTATGATGGAACTCTCTCCCCAATTGTAGCAGATCCAGATAAAGCCTACATGAGCAAAAAGATGAGAGTGACATTGAAGGACATAGCAAGACATTTTCCCACTGCCATTGTTAGTGGAAGGTGCTTAGACAAGCTATTTAGCTTTGTAAGGTTGGCTGAATTATACTATGCTGGAAGCCATGGGATGGATATTAAGGGTCCAACAAATAGGAGAAGCACTAAAAAAGGTAATAATGATGGGGTACTTTTGCAGCCTGCTAGTGAATTTTTGCCCATGATCAATGAGGTTTATAAGATCTTGGTGGAGAAAACAAAGTGTGTTCCAGGGGCTATGGTGGAAAATAACAAGTTTTGTTTATCTGTGCATTTTCGGAACGTTGACGAAAAGAGTTGGGAAGCATTGGGTGAACAAGTAAGCTTAGTGATGAATGATTACCCAAAACTAAAGCTAACACAAGGGAGAAAAGTGTTGGAAATTCGACCAATTATTAAATGGGACAAAGGAAGGGCTCTTGAATTTTTGCTAGAGTCACTTGGTTTTGCAAATTCTAAAGGAGTATTTCCAATCTATATTGGTGACGATAGAACCGACGAAGATGCTTTTAAGGTTTTACGCAATAGGGGCCAAGGGTGTGGGATTCTTGTTTCAAAAATTTCAAAAGAAACTAATGCTTCTTACACTTTGCAAGATCCATCTGAGGTTGGAGAATTTTTGCGGCATTTGGTGGATTGGAAAAGAACAAGTTCTCGTTCTCACAAGTTGTAG 1140 0.3868 MTNQNMLGKSRVIVNEKILELAMSISNSNVLPRTSMPELMALFDGLLGQRKNNLIKPLEDDNDHKGATKVNAWIDSMRASSPTRTRHDSENRDQTHWTLFHPSALNMFSKIMYNTNGKQIVVFLDYDGTLSPIVADPDKAYMSKKMRVTLKDIARHFPTAIVSGRCLDKLFSFVRLAELYYAGSHGMDIKGPTNRRSTKKGNNDGVLLQPASEFLPMINEVYKILVEKTKCVPGAMVENNKFCLSVHFRNVDEKSWEALGEQVSLVMNDYPKLKLTQGRKVLEIRPIIKWDKGRALEFLLESLGFANSKGVFPIYIGDDRTDEDAFKVLRNRGQGCGILVSKISKETNASYTLQDPSEVGEFLRHLVDWKRTSSRSHKL* 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g2143 379 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 1 379 IPR044651 GO:0004805|GO:0005992
Mtr5g2143 379 Gene3D - 202 287 - -
Mtr5g2143 379 CDD HAD_TPP 121 361 - -
Mtr5g2143 379 Gene3D - 122 353 IPR023214 -
Mtr5g2143 379 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 1 379 - -
Mtr5g2143 379 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 122 331 IPR006379 -
Mtr5g2143 379 TIGRFAM T6PP: trehalose-phosphatase 118 367 IPR003337 GO:0003824|GO:0005992
Mtr5g2143 379 SUPERFAMILY HAD-like 121 370 IPR036412 -
Mtr5g2143 379 Pfam Trehalose-phosphatase 123 357 IPR003337 GO:0003824|GO:0005992
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g2143 Mtr-Chr5 27694053 27696788 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g2143 116 327 Trehalose Biosynthesis Gene Families AT1G23870 25.561 5.37e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g2143 K01087 - gmx:100785139 560.066
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g2143 5 27694053 27696788 Mtr5g2143 5 27694053 27696788 ECH
Mtr5g2143 5 27694053 27696788 Mtr3g2323 3 36986511 36988937 PCT