Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g2142 ATGATGCTAATCACCATCTCAAATCGTGCTCAGAGTTCTGCCCTGTTAAGTGATACCGGGGAGCTACATTCCGAAGCATTCCCCACAAAATCTATATTTACCATCCCCACCAAAATCTGGCAGAAATGTGTCGGAGCCTCAGTCAAGATTCCGAAGCTACATTCTAAAGTTTACTACTTCCCACAAGGTCACTTAAAACATGTCTCCCCTCACACAATCATCACCCTTCTTCATTGTTATCCTCCTTCCATTTCCTGCATCATCTCAGCCGTTGATCTCCTTGTTGATCCTCACACAGATGAAGTCTTTGCCAAACTGCTCCTCACTCCCGTAATGGATGGCCATGGCCACGAACAAGAAGCTCCTCCGGAGGTTCCTGCCGAAGACGACGATGGTTACAATGTTGTTTCCTTTGTCAAGATTCTCACACAATCTGATTGCAATAGTGGCTGTGGATTCATTGTACCTCTCCCTTGCGTTGACTTGATCTTGCCGAAGCTTAGCTTGGACGATCCAATGCCATCTCAGAAACTCTCCGTCACTGACATTCAAGGCCGAATCTGGCAGTACACACATATCTACCGCGGTAAATCCAAGAGACACCTTTTCAGTAGGGGATGGACTTCCTTTGTCAACAACAAGAAACTCGTCGCTGCTGGGAAGATATTCGTCGGAATACGCCGGAAAAGTGGGAAGGTAACAGAGAAGGCGGTTATGGATGCGGTGGAATTGGTGGTGAAAAGTATGGCATTTGAAGTTTTGTATTATCCGAGAGCGAATTGGATTGATTTTGTAGAGGATGCAAATGTTGTTGATGACGGCATGAAGATTAGTTGGACATCTGGAATGAAAGTCAAGCTTCCTTTGAAGAAAGAAGAATCTTCAAATTCAAAGATGATATTTTATCAGCCTCGGGGGACAAACTCAGATGTTTATAAAGCTCCTTCTAATGTCCCTAATTGGCGCATGCTTCAGGTTAAGTGGGATGAACCTGAAATTTCGCAGAATCCAAACCGTGTCAATCCTTGGCAGAAAGCCAGGCATGATCATCTATCTGAATCAGGTTCTTCAAACTTTTTGAATGATAAGGGTGATGTTTTCTTCGGGAACAATTTAATGGCAGTCCTGCATCTGACGACTTATCAGAATCCGGTTCTTTGGGAACAATTCAATGGCAGGGTTGAGTAG 1188 0.4436 MMLITISNRAQSSALLSDTGELHSEAFPTKSIFTIPTKIWQKCVGASVKIPKLHSKVYYFPQGHLKHVSPHTIITLLHCYPPSISCIISAVDLLVDPHTDEVFAKLLLTPVMDGHGHEQEAPPEVPAEDDDGYNVVSFVKILTQSDCNSGCGFIVPLPCVDLILPKLSLDDPMPSQKLSVTDIQGRIWQYTHIYRGKSKRHLFSRGWTSFVNNKKLVAAGKIFVGIRRKSGKVTEKAVMDAVELVVKSMAFEVLYYPRANWIDFVEDANVVDDGMKISWTSGMKVKLPLKKEESSNSKMIFYQPRGTNSDVYKAPSNVPNWRMLQVKWDEPEISQNPNRVNPWQKARHDHLSESGSSNFLNDKGDVFFGNNLMAVLHLTTYQNPVLWEQFNGRVE* 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g2142 395 Pfam B3 DNA binding domain 138 220 IPR003340 GO:0003677
Mtr5g2142 395 CDD B3_DNA 137 218 IPR003340 GO:0003677
Mtr5g2142 395 Gene3D - 279 351 - -
Mtr5g2142 395 Gene3D - 135 236 IPR015300 -
Mtr5g2142 395 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 34 346 IPR044835 GO:0003677|GO:0006355|GO:0009725
Mtr5g2142 395 PANTHER AUXIN RESPONSE FACTOR 17 34 346 - -
Mtr5g2142 395 Pfam Auxin response factor 241 325 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Mtr5g2142 395 SUPERFAMILY DNA-binding pseudobarrel domain 136 220 IPR015300 -
Mtr5g2142 395 SMART B3_2 138 230 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g2142 Mtr-Chr5 27648279 27651581 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g2142 39 353 B3 DNA Binding Superfamily AT1G77850 38.786 1.24e-79 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Mtr5g2142 Auxin_resp 2.8e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g2142 - - mtr:MTR_5g062970 454.136