Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g2141 ATGGATGATTACTATTGCTATGCATACCCAGATATTACTTTCACCAACACAAAAAATATTTCATCATGCCCTAATGAAAAGTATTTCAATGTAGAGTTTGATTACACAAACATGTATGTTTTGAGTGAGAAAAATTTTGAAACTTTTTCTGACACAAAGCGTTACAATTTTTCAAATGTCTCTAAGGATCAACTAATGCAAGAAAGTACCATTGTATCATGGCTTTCTCAAATGGATGTTCCCGAAGATGCTTTTAGGTATGTAGTGGCAGATATTTTCAAGTGTGCTCGGGATATGGTTAATGGTGTCTATAAGAATCAAAGGGATCTTTCTATTCGAGTCGTTCTTAGCGTTACACGGGCCAGTGAAGATGAAACTGATGATGACGACGATGATAATCATGAAGAAGAGGATGGTGATGAAGAGAATAATGGGTTGATTCCGGCGGCAAAGTCATGTATCGAGGAATTGGAGGTGGTGAAAGTTGAAAAAGTGGAAGAATGTGCTATTTGTTTGAATGATGTTATCATTGGTGTCGCTATGCCGTGTTTATCACACACATTTCATATGAAATGCATTCGTCGTTGGTTGAATAGAGGCAACTCTTGTCCTTTGTGTAGGATTCAGTTGCCAACTAGAACAAGCAAATGA 651 0.3717 MDDYYCYAYPDITFTNTKNISSCPNEKYFNVEFDYTNMYVLSEKNFETFSDTKRYNFSNVSKDQLMQESTIVSWLSQMDVPEDAFRYVVADIFKCARDMVNGVYKNQRDLSIRVVLSVTRASEDETDDDDDDNHEEEDGDEENNGLIPAAKSCIEELEVVKVEKVEECAICLNDVIIGVAMPCLSHTFHMKCIRRWLNRGNSCPLCRIQLPTRTSK* 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g2141 216 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 78 210 - -
Mtr5g2141 216 SMART ring_2 168 206 IPR001841 -
Mtr5g2141 216 MobiDBLite consensus disorder prediction 123 143 - -
Mtr5g2141 216 MobiDBLite consensus disorder prediction 121 145 - -
Mtr5g2141 216 SUPERFAMILY RING/U-box 167 213 - -
Mtr5g2141 216 Pfam Ring finger domain 167 207 IPR001841 -
Mtr5g2141 216 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 148 216 IPR013083 -
Mtr5g2141 216 ProSiteProfiles Zinc finger RING-type profile. 168 207 IPR001841 -
Mtr5g2141 216 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 78 210 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g2141 Mtr-Chr5 27600270 27600920 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g2141 148 216 C3H Transcription Factor Family AT5G20910 41.250 3.12e-12 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g2141 - - mtr:MTR_5g062820 381.333