Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g2140 ATGGATGATTACTATTGCTATGCATACCCAGATATTACTTTCACCAACACACAAAATATTTCATCATGCCCTAATGAAAAGTATTTCAATGTAGAGTTTGAGTACACAAATATGTATGTTTTGAGTGAGAGAAATTTTGAAACTTTTTCTGACACAAAGCTTTACAAGTTTTCAAATGTCTCTAAGGATCAAATAATGCAAGAAAGCACCATTGTATCATGGCTTTCTCAAATGGATGTTCCCGAAGATGCTTTTAGGTATGTAGTTGCAGATATTTTCAAGTGTGCTCGAGATATGGTTAATGGTGTCTATAAGAATCAAAGGGTTCTTTCTATTCGAGTCGTTCTTAGCATTACAAGGGCCAGTGAAGATGATACTGATGATGATGATGAAGAAGTTGATGGTGATGAAGAAAATAATGGGTTGATTCCCGCGGCAAAGTCATGTATCGATGAATTGGAGGTGGTGAAAGTTGAAAAAGTGGAAGAATGTGCTATTTGTTTGAATGATGTTATCGTTGGTGTCGCTATGCCGTGTTTATCACACACATTTCATATGAAATGCATCCGTCGTTGGTTGAATAGAGGCAACTCTTGTCCTTTGTGTAGGATTCAGTTGCCAACTAGAACAAGCAAATGA 639 0.3662 MDDYYCYAYPDITFTNTQNISSCPNEKYFNVEFEYTNMYVLSERNFETFSDTKLYKFSNVSKDQIMQESTIVSWLSQMDVPEDAFRYVVADIFKCARDMVNGVYKNQRVLSIRVVLSITRASEDDTDDDDEEVDGDEENNGLIPAAKSCIDELEVVKVEKVEECAICLNDVIVGVAMPCLSHTFHMKCIRRWLNRGNSCPLCRIQLPTRTSK* 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g2140 212 ProSiteProfiles Zinc finger RING-type profile. 164 203 IPR001841 -
Mtr5g2140 212 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 78 206 - -
Mtr5g2140 212 SMART ring_2 164 202 IPR001841 -
Mtr5g2140 212 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 145 212 IPR013083 -
Mtr5g2140 212 SUPERFAMILY RING/U-box 163 209 - -
Mtr5g2140 212 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 78 206 - -
Mtr5g2140 212 Pfam Ring finger domain 163 203 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g2140 Mtr-Chr5 27593969 27594607 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g2140 110 207 C3H Transcription Factor Family AT1G14200 34.906 5.85e-12 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g2140 - - mtr:MTR_5g062820 410.994