Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mtr5g2138 | ATGTCTTCATCATCATCGGTCGATACTAAAAAAGGAACATGGTCAAAAGAAGAAGATGAAATATTAAAAGCATATGTGGAAAACCATGGAACCAGAAATTGGAACGAGGTATCGAAAAATGCCGGGCTTATACGTTGCGGTAAAAGTTGTCGTCTAAGATGGTATAATCACCTGCAACCAGATGTGAAAAAGGGTCCATTTAGTGAAGAAGAAGAAACAAAAGTTTTTGTGTTCTATAAAAAGTATGGTGAATTCAAATGGTCTAAGCTGGCTGAGGAGTTACCGGGAAGAAGCGATAATGACATCAAGAACTTTTGGAACGCGAGAAAAAGAAAACTTGAAAGGCGTGGCTTGTCACCCTTCCCTGACAACATGGAACTGGATGATGAGCTGAATAGTAGCCAACAAATTGAGGATTCACAAGAAGATGAATTTCATATACCACAATTGAAATTTAGAAAATATCCATCAATTTTTGATGAGATAAATGAAAAACTTTTAGATGTCCCAAACATGTTCTACAATAATATTGTGGGAAGTACTTCAACATTGATTGATAGGGGAAGCATTATTGGAACTTCTTATATACCTATGGCTCCACCCCCACCATGTTCATACCTTCCACCACCTATGGAGACTCAGTATCATGGTGACTTTATGGATCCAGATTTTTGGTTACACAACAGTTCATTAGACAATGACGATGCTAGGCGTGTGTATTTGTCTGAGACAAATTTCGTTGATGAAAAAGGGAAGAAGCCTATTTCGTTGGAGGACGATGTTGAAGCAAACCTCCTTGATGACTTCATGGATCCATTTCTATGTATTGACTTCAGTAATTTGGAGGACGATGTTGAAGCCGGCGGTCGTTTATTTGACAATGATGATAACCGTAACTTGCATGACACGATATAA | 915 | 0.3825 | MSSSSSVDTKKGTWSKEEDEILKAYVENHGTRNWNEVSKNAGLIRCGKSCRLRWYNHLQPDVKKGPFSEEEETKVFVFYKKYGEFKWSKLAEELPGRSDNDIKNFWNARKRKLERRGLSPFPDNMELDDELNSSQQIEDSQEDEFHIPQLKFRKYPSIFDEINEKLLDVPNMFYNNIVGSTSTLIDRGSIIGTSYIPMAPPPPCSYLPPPMETQYHGDFMDPDFWLHNSSLDNDDARRVYLSETNFVDEKGKKPISLEDDVEANLLDDFMDPFLCIDFSNLEDDVEAGGRLFDNDDNRNLHDTI* | 305 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mtr5g2138 | 304 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 63 | 114 | IPR017930 | - | |
| Mtr5g2138 | 304 | Pfam | Myb-like DNA-binding domain | 14 | 74 | - | - | |
| Mtr5g2138 | 304 | Gene3D | - | 63 | 115 | - | - | |
| Mtr5g2138 | 304 | PANTHER | MYB DNA-BINDING DOMAIN PROTEIN | 1 | 176 | - | - | |
| Mtr5g2138 | 304 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 6 | 62 | IPR017930 | - | |
| Mtr5g2138 | 304 | PANTHER | TRANSCRIPTION FACTOR MYB33-RELATED | 1 | 176 | - | - | |
| Mtr5g2138 | 304 | SMART | sant | 63 | 112 | IPR001005 | - | |
| Mtr5g2138 | 304 | SMART | sant | 10 | 60 | IPR001005 | - | |
| Mtr5g2138 | 304 | CDD | SANT | 66 | 107 | IPR001005 | - | |
| Mtr5g2138 | 304 | SUPERFAMILY | Homeodomain-like | 8 | 106 | IPR009057 | - | |
| Mtr5g2138 | 304 | CDD | SANT | 13 | 58 | IPR001005 | - | |
| Mtr5g2138 | 304 | Gene3D | - | 10 | 62 | - | - | |
| Mtr5g2138 | 304 | ProSiteProfiles | Myb-like domain profile. | 6 | 58 | IPR001005 | - | |
| Mtr5g2138 | 304 | ProSiteProfiles | Myb-like domain profile. | 59 | 110 | IPR001005 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Mtr5g2138 | Mtr-Chr5 | 27584598 | 27585731 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Mtr5g2138 | 11 | 156 | MYB Transcription Factor Family | AT2G26960 | 46.835 | 6.30e-44 | 153 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | MYB | Mtr5g2138 | Myb_DNA-bind_6 | 1e-14 | CL0123 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Mtr5g2138 | K09422 | - | mtr:MTR_5g088640 | 436.417 |