Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g2126 ATGAAAGGTGGAGATAAAAATTGGTCCGATGATCAATACAGGATGAAGAAGAAGCGTAAGGAATTGGGTGGGGAATCATCATCATCCAACAACATTGCTCGTACTTGCACTGAATGTGGTAAGATATTCTGGTCATGGAAGGCTCTTTTTGGTCATATGCGTTGTCATCCTGAGCGTCAATGGAGAGGCATTAACCCTCCTCCTAATTTCAGAAGACAACAACAACAACTTGTGACTCCAGAAGAACAGGAAGGTGCTGCTTCTTTGCTTTTACTTGCTAATTCAAATCCAAAGAACAAGAACAAGAACAAGAACAAGAAAACAACAACAACGGTGGTGGATGATGAGGATCAGTTTGTGTGTTCGTGTTGCAACAAAGTATTTGGATCCCATCAGGCACTTGGAGGACACAGGGCTAGTCACAAGAATGTCAAGGGCTGTTTCGCCGCCAATACAACTCACGATGACAACCATCACCCAATGACTCGTGGAAACGTTGAAGGGGAAGAGGTTAATAGTAATAATAATAATAATGACTGCATCATCGGACACAAGTGTAGCATATGTTTGAGGGTATTTAGCACTGGACAAGCACTCGGTGGTCATAAGAGGTGTCATTGGGATAAAGGGGAACCCACGACACCAACACTACCATTTGATTTGAATTTCCCTTTTCCACCTCTCCCTCCTCCTGCTCCAGATCATTCTTCTTCTCCCCTCACTCTTCATTTGAGGTTGTGA 741 0.4345 MKGGDKNWSDDQYRMKKKRKELGGESSSSNNIARTCTECGKIFWSWKALFGHMRCHPERQWRGINPPPNFRRQQQQLVTPEEQEGAASLLLLANSNPKNKNKNKNKKTTTTVVDDEDQFVCSCCNKVFGSHQALGGHRASHKNVKGCFAANTTHDDNHHPMTRGNVEGEEVNSNNNNNDCIIGHKCSICLRVFSTGQALGGHKRCHWDKGEPTTPTLPFDLNFPFPPLPPPAPDHSSSPLTLHLRL* 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g2126 246 ProSiteProfiles Zinc finger C2H2 type domain profile. 119 146 IPR013087 -
Mtr5g2126 246 ProSiteProfiles Zinc finger C2H2 type domain profile. 34 61 IPR013087 -
Mtr5g2126 246 ProSitePatterns Zinc finger C2H2 type domain signature. 186 206 IPR013087 -
Mtr5g2126 246 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 14 246 - -
Mtr5g2126 246 Pfam C2H2-type zinc finger 184 209 - -
Mtr5g2126 246 Pfam C2H2-type zinc finger 119 142 - -
Mtr5g2126 246 Pfam C2H2-type zinc finger 35 58 - -
Mtr5g2126 246 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 14 246 - -
Mtr5g2126 246 SMART c2h2final6 184 206 IPR013087 -
Mtr5g2126 246 SMART c2h2final6 34 56 IPR013087 -
Mtr5g2126 246 SMART c2h2final6 119 141 IPR013087 -
Mtr5g2126 246 MobiDBLite consensus disorder prediction 64 83 - -
Mtr5g2126 246 ProSitePatterns Zinc finger C2H2 type domain signature. 36 56 IPR013087 -
Mtr5g2126 246 Gene3D Classic Zinc Finger 33 141 - -
Mtr5g2126 246 SUPERFAMILY beta-beta-alpha zinc fingers 35 141 IPR036236 -
Mtr5g2126 246 MobiDBLite consensus disorder prediction 226 246 - -
Mtr5g2126 246 MobiDBLite consensus disorder prediction 67 82 - -
Mtr5g2126 246 ProSiteProfiles Zinc finger C2H2 type domain profile. 184 211 IPR013087 -
Mtr5g2126 246 ProSitePatterns Zinc finger C2H2 type domain signature. 121 141 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g2126 Mtr-Chr5 27421896 27422636 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g2126 32 246 C2H2 Transcription Factor Family AT4G35280 48.498 1.47e-61 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mtr5g2126 zf-C2H2_6 4.6e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g2126 - - mtr:MTR_5g099040 306.99