Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g2110 ATGGGTCGGGTTAAACTTGAAATAAAAAGAATAGAGAACACAACGAATAGACAAGTTACGTTCTCAAAACGTAGAAATGGTCTCATCAAGAAAGCTTATGAGTTGTCAATCCTTTGTGATATTGATATTGCTCTTATAATGTTTTCTCCATCAAAACGTCTTAGTCATTTTTCCGGTAAAAGAAGGATAGAAGATGTTTTAAGTCGTTACATTAATCTTCCTGACCAAGAAAGAGATAATGCTGTAAGTTTTCCTGAGCCACCCTACCGCAGGGGTATTCAGAACAAGGAGTATTTTCTCAGGATTCTTCAGCAGTTGAGAAGTGAAAATGACGTATCCCTTCATATGTCCAATCCGGGAGACATCAACTCTGAGATTGAGGAACTCCAACAAGAAGTTTGTAGATTACAACAACAACTTCAAATGGCAGAGGAACAGATAAGGATATACGAACCCGACCCATTAAAGATGACTTCTATTGCAGAGCTTGAAACAAGTGAAAAAAACATTGTAGAAACCATGTCACGTGTCATGCAGAGAAAGGAAGTTTTGTTGAACAACCAACTATCTTCGTATGATCCATCTAGTATTCAGGGAATGCCCACCACTTTCGAGAATGTAGGTTGGCTACAAGATAGTGGACAGAACCATTCTCATAACATTTTTGACGCATCAGCTCCTATGGATCCTCTCAGGGATTTGTCCTCTGCTGTGTATGGTTCATTTTCACAAGGAACAAGTTCAAATGTTGTTGATCAAAGAAATATAGGAGAATGCCACGTGGCAAATCCAAACGATGGAAACATGCAAACATGGCCACAAGGATACACATTATATCCTCAACAACATCATCAACATATTCAACATGACATAGTAGGAACTGATCATCAACATCATCATCATCACAACATCCAAGATATGATGCCACATGGACAAATGAACATGCCAATCACTGCCTCACAAGTTGAACCACCCAAAAATGAATCATTAACAGATCAATATGATCAATGTAAACAACCTAATCATCAGCTTCATGCTCAATGA 1044 0.3831 MGRVKLEIKRIENTTNRQVTFSKRRNGLIKKAYELSILCDIDIALIMFSPSKRLSHFSGKRRIEDVLSRYINLPDQERDNAVSFPEPPYRRGIQNKEYFLRILQQLRSENDVSLHMSNPGDINSEIEELQQEVCRLQQQLQMAEEQIRIYEPDPLKMTSIAELETSEKNIVETMSRVMQRKEVLLNNQLSSYDPSSIQGMPTTFENVGWLQDSGQNHSHNIFDASAPMDPLRDLSSAVYGSFSQGTSSNVVDQRNIGECHVANPNDGNMQTWPQGYTLYPQQHHQHIQHDIVGTDHQHHHHHNIQDMMPHGQMNMPITASQVEPPKNESLTDQYDQCKQPNHQLHAQ* 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g2110 347 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Mtr5g2110 347 SUPERFAMILY SRF-like 2 80 IPR036879 GO:0003677|GO:0046983
Mtr5g2110 347 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Mtr5g2110 347 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mtr5g2110 347 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mtr5g2110 347 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Mtr5g2110 347 Coils Coil 126 146 - -
Mtr5g2110 347 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Mtr5g2110 347 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Mtr5g2110 347 Gene3D - 13 85 IPR036879 GO:0003677|GO:0046983
Mtr5g2110 347 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 277 - -
Mtr5g2110 347 MobiDBLite consensus disorder prediction 316 347 - -
Mtr5g2110 347 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL104 1 277 - -
Mtr5g2110 347 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g2110 Mtr-Chr5 27204506 27210481 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g2110 1 319 Type I MADS-box Gene Family AT1G22130 56.790 2.16e-116 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Mtr5g2110 SRF-TF 5.2e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g2110 - - pvu:PHAVU_008G170400g 497.664
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g2110 5 27204506 27210481 Mtr5g2110 5 27204506 27210481 ECH