Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g2101 ATGAGTAGCAAAAAGAATAACTCCGTTTCTGTTATTGTTTCCAACCCTAAGGTTCTTAATTGCTCCAATTGTTTTGAACTCTTAACCATTCCACTCTATAAGTGTGATAATGGCCATATTGTTTGCTCTACCTGCTGTGATAAACTTGAGAAGAAGTGTCCGAAGTGCTACATTAGCTCGAAACGTTGTAAAGCCATTGAGAATATATTGCAATCTATGGAAGAAATATCATGTCCGAATGAAAAACATGGTTGCAGGGAGACAATAAGTTACTGCAGAAATAGGAAGCATGAAAAAGAATGTATCTATGAGCCATGTTACTGCCCCTTTTCAGGTTGTGACTTCGTTGCATCATCAGAAGTGCTGTCCAGCCATTTTAGCCAAAAACACGGGGATTCTCAAAATAAATTTTCTTATGATCACTCCTTCATTGTCTCCTTGAATTCTAATGATGAAACCGTTGTTCTTCAAGAGAAAAACGATGGCCAATTATTTATCCTCAAAAATATTACTATGTTTTTGGGAAACGCGGTCAATGTTTGCTGCATTGGTCCAAAATCTTCTGAGTCCAAGTATAGTTATAATATTTTAGCTTGTTCTAAGATGAGTGAGCTGAAATTTCACACTTTTGCGAAGAATGTCCAACGGGTTACTTTGAAAACTCTTTCATCAAAGTTCCTTGTGATTCCATTTGGTTTTTCTGAACCTCTCGAGATAGAAATTTGCATCAGATCATTTCCTTGTGATTCCATGATGCAAATATTCATAAAGAAGCTGGATGGAAAGGTGTTACCCTTGAGGGTTAAGAGTTCAGACACGATATACAGTGTGAAGGAGAAGATTTTTAACAAGGAAAAGTACGCAATAATCGATCAACGTCTGATCTTTTCCGGTAATCAACTACCTGATCATCAGACCATTGCCAATTGCAACATCGAAGAGAAGTCAGCCATCTTCCTCGTCTTTCGCCTCATGGGCGACTAG 984 0.3791 MSSKKNNSVSVIVSNPKVLNCSNCFELLTIPLYKCDNGHIVCSTCCDKLEKKCPKCYISSKRCKAIENILQSMEEISCPNEKHGCRETISYCRNRKHEKECIYEPCYCPFSGCDFVASSEVLSSHFSQKHGDSQNKFSYDHSFIVSLNSNDETVVLQEKNDGQLFILKNITMFLGNAVNVCCIGPKSSESKYSYNILACSKMSELKFHTFAKNVQRVTLKTLSSKFLVIPFGFSEPLEIEICIRSFPCDSMMQIFIKKLDGKVLPLRVKSSDTIYSVKEKIFNKEKYAIIDQRLIFSGNQLPDHQTIANCNIEEKSAIFLVFRLMGD* 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g2101 327 Pfam Ubiquitin family 254 324 IPR000626 GO:0005515
Mtr5g2101 327 SUPERFAMILY Ubiquitin-like 221 326 IPR029071 -
Mtr5g2101 327 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 71 126 IPR013083 -
Mtr5g2101 327 ProSiteProfiles Zinc finger SIAH-type profile. 73 131 IPR013010 GO:0008270
Mtr5g2101 327 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 3 249 IPR044286 -
Mtr5g2101 327 SUPERFAMILY TRAF domain-like 76 244 - -
Mtr5g2101 327 Pfam Seven in absentia protein family 62 223 IPR018121 GO:0005737|GO:0006511|GO:0007275
Mtr5g2101 327 SMART ubq_7 252 323 IPR000626 GO:0005515
Mtr5g2101 327 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 3 249 - -
Mtr5g2101 327 Gene3D - 247 327 - -
Mtr5g2101 327 ProSiteProfiles Ubiquitin domain profile. 252 327 IPR000626 GO:0005515
Mtr5g2101 327 PRINTS Ubiquitin signature 262 282 IPR019956 -
Mtr5g2101 327 PRINTS Ubiquitin signature 283 303 IPR019956 -
Mtr5g2101 327 PRINTS Ubiquitin signature 304 325 IPR019956 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g2101 Mtr-Chr5 27017126 27019687 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g2101 252 326 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 53.333 4.10e-18 77.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g2101 K04506 - gmx:100778869 232.261