Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g2100 ATGTCTTCCCCACCGGCAACCATGTCTGTCCCTCCGCCACGCCGCGTGAAATCCAAAATTTGGCAGACATGTGCCGGTCCATCGGTGAACGTTCCAAAGGTACGTTCTAAAGTTTATTACTTCCCACATGGTCACTTGGAACATGCCTGCCCTTCCCCTAACCCTCAAACAATCACGGTTATTGATGGATATGGTCCTTCCTTTCCTTGTATCATCACAGCCGTTGATCTCCTAGCTGATCCTCACACCGATGAGGTCTTCGCCAAATTGCTACTCAGTCCGGTAACTGAAGGACAAGAATTTCCTGAGGTTGTTGACGAAGAAGACGACGGTGGTGATAAGTTTGTTTCCTTCGTAAAGACTCTTACAAAATCTGATTCTAATAACGGTGGTGGATTCTCTGTACCTCGCATTTGTGCTGACTTGATCTTCCCTAAGCTTGACTTAAATTCTCCTTTTCCATCTCAGCAATTGTCTGTTACTGATGTTCATGACCGAGTTTGGAAGTTTGCTCATGTCTATCGAGGGAGACCCAAAAGACACCTTTTTACTACTGGTTGGACTCCGTTTGTGAACACGAAAAAACTCGTTGCCGGTGATTCTATTGTTTTCATGAAAAACACTGCCGGAGATATAGTGGTTGGAATCCGCAGAAACATTAAGTTTGCTGCAGCTGAAACAAAAGCAGTGAATAATAAGAAGGAGGAGGGTAAAGAGAATGGTTTGGAGGTTAAGAGAGAGGGCTTTTCTCGAGGCGGGAGAAGGGGAATGCTAACCGAGAAGGCGGTTATTGAGGCAGTGGAGTTGGCGGAAAAGAATCTGGCATTTGAAGTTATATATTACCCTAGGGCTAATTGGTGCAATTTTGTAGTTGATGCAAATGTTGTGGATGATGCTATGAAGATTGGTTGGGCATCTGGAATGAGAGTGAAGCTTCCTTTGAAGATTGATGAATCTTCAAATTCAAAGATGACATTTTTTCAGCCTCAAGGAACAATTTCTAATGTGTCCAGTGTCCCTAATTGGCGCATGCTTCAGGTTAACTGGGATGAACTTGAAATTTTGCAAAATCAAAACCGCGTCAATCCTTGGCAAGTTGAACTTATTTCCCACACACCTGCAGTGCATCTACCATTCCTCTCAACAAAAAAGCCTAGACTAGTTCAAGATTCTGCCTTGTTCTGTGATGACAAGGGTGATCCCTTCATTCCTATGATAGAGTTCCCTAAGAGATCTTTGAACCAAACATTGTTGAATTGTGGTTATTTTCCAGCAGGCATGCAGGGAGCCAGGCATGATCATTTATCTCTATCAGGTTTTTCCAACTCTTTGAATGATAATAGTTATAGTTTCTTTGTAAACAATCTAAACATTGACATGCCGACAACCAACGACTTGTCGCCAAATAACCTTGATAGTTTGAACACCTTTGAGACAGATTTTGTTGAGACTCACAACAGCAACATAAAAGGAGTTGGGTCTGGTTCAATTAAGTTATTTGGTAAGATCATAAAGCCTGTTGAAAGTGATGTCCATGATTCCGGTACCAAGGGAGAAGATTCCTCTAAGGGATCCAATGAAATTTAA 1587 0.4241 MSSPPATMSVPPPRRVKSKIWQTCAGPSVNVPKVRSKVYYFPHGHLEHACPSPNPQTITVIDGYGPSFPCIITAVDLLADPHTDEVFAKLLLSPVTEGQEFPEVVDEEDDGGDKFVSFVKTLTKSDSNNGGGFSVPRICADLIFPKLDLNSPFPSQQLSVTDVHDRVWKFAHVYRGRPKRHLFTTGWTPFVNTKKLVAGDSIVFMKNTAGDIVVGIRRNIKFAAAETKAVNNKKEEGKENGLEVKREGFSRGGRRGMLTEKAVIEAVELAEKNLAFEVIYYPRANWCNFVVDANVVDDAMKIGWASGMRVKLPLKIDESSNSKMTFFQPQGTISNVSSVPNWRMLQVNWDELEILQNQNRVNPWQVELISHTPAVHLPFLSTKKPRLVQDSALFCDDKGDPFIPMIEFPKRSLNQTLLNCGYFPAGMQGARHDHLSLSGFSNSLNDNSYSFFVNNLNIDMPTTNDLSPNNLDSLNTFETDFVETHNSNIKGVGSGSIKLFGKIIKPVESDVHDSGTKGEDSSKGSNEI* 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g2100 528 Gene3D - 304 374 - -
Mtr5g2100 528 CDD B3_DNA 117 218 IPR003340 GO:0003677
Mtr5g2100 528 Pfam Auxin response factor 266 351 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Mtr5g2100 528 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 9 526 IPR044835 GO:0003677|GO:0006355|GO:0009725
Mtr5g2100 528 SUPERFAMILY DNA-binding pseudobarrel domain 113 218 IPR015300 -
Mtr5g2100 528 SMART B3_2 118 220 IPR003340 GO:0003677
Mtr5g2100 528 Pfam B3 DNA binding domain 118 219 IPR003340 GO:0003677
Mtr5g2100 528 PANTHER AUXIN RESPONSE FACTOR 9 526 - -
Mtr5g2100 528 Gene3D - 116 220 IPR015300 -
Mtr5g2100 528 ProSiteProfiles B3 DNA-binding domain profile. 118 220 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g2100 Mtr-Chr5 26991569 26993407 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g2100 1 527 B3 DNA Binding Superfamily AT1G77850 38.957 5.46e-122 369
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Mtr5g2100 B3 2e-18 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g2100 - - aip:107624033 469.929