Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g2097 ATGAACATGTATGAGCCATTCCTTCAAGTGAGTATTTGGGAGGATAGCTTTAAAGTGGATCATAGTACTTTGAATTCAATTGCTTCCCCAATGTTGAAGATGAACATAACTAGCATGGAAAACAAGTCTGAATGCATCCCTCAAGAATCAAGAGAACCTTCTGGAGATGATCAAGAGACTATTCAAGAACCTGTTCCTAAGGTACTACGACGTCAAGCACAGAATCGCGCAGCTGCTCGAAAATGTCGGCTGCGAAAGAAGGCTTATGTTCAACAACTGGAAACAAGTAGATTGAAGCTCATGCAGTTAGAATTGGATATCGAGAAAACAAGAAAACAGGGTTTATACAAAAGCAGTTTATCGGATGTCGGTTATATGGGATCGTCCGGAACAATAAACTCAGGGATATCATTGTTTGAAATTGAATATGGACGTTGGATTGAAGAACAAGATCGACAAAACGAGGAACTAAGAAATGCATTGCAAACTAATGCATCTGATATACAACTTCATCTACTTGTTGAGAGTAGCTTGAACCAATACTCAAATCTTTTCAGAATGAAAGCTGAAGCTGCAAAGGCTGATGTTTTCTATTTAATCTCTGGCGTATGGAAATCACCGGTCGAACGCCTTTTTCTTTGGATCGGAGGATCTCGTCCATCACAAATTCTAAATCAAGCTGAAGATGCACTATCAATAGGGTTGGAGAAACTCCAGCAGAGTATGATCAACAACATTCAAGCTGATCCCTTGGATTTCGGAAACTACGGCTTTCAGATGGCTGCTGCCATTGACAAAGGAGAAGCAGTAGAAGGTTTTGTAATCCAGGCAGATCACCTTAGGCAACAAACTCTGTTATACATGTCACGCATCTTATCGATTGGTCAAGCTGCTCAAGGCTTGCTGGCTATGGGGGAATACTTTCATCGTCTTCGCACTCTTAGTTCATTGTGGACTGCTCGTTCATGTCATCATTTCTACCCTACTCAACACTCAAATTAA 1002 0.4082 MNMYEPFLQVSIWEDSFKVDHSTLNSIASPMLKMNITSMENKSECIPQESREPSGDDQETIQEPVPKVLRRQAQNRAAARKCRLRKKAYVQQLETSRLKLMQLELDIEKTRKQGLYKSSLSDVGYMGSSGTINSGISLFEIEYGRWIEEQDRQNEELRNALQTNASDIQLHLLVESSLNQYSNLFRMKAEAAKADVFYLISGVWKSPVERLFLWIGGSRPSQILNQAEDALSIGLEKLQQSMINNIQADPLDFGNYGFQMAAAIDKGEAVEGFVIQADHLRQQTLLYMSRILSIGQAAQGLLAMGEYFHRLRTLSSLWTARSCHHFYPTQHSN* 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g2097 333 Coils Coil 93 113 - -
Mtr5g2097 333 SMART brlzneu 63 123 IPR004827 GO:0003700|GO:0006355
Mtr5g2097 333 Gene3D - 67 119 - -
Mtr5g2097 333 PANTHER FACTOR TGA7, PUTATIVE-RELATED 1 225 - -
Mtr5g2097 333 PANTHER FACTOR TGA7, PUTATIVE-RELATED 226 325 - -
Mtr5g2097 333 PANTHER TRANSCRIPTION FACTOR TGA9 226 325 - -
Mtr5g2097 333 PANTHER TRANSCRIPTION FACTOR TGA9 1 225 - -
Mtr5g2097 333 SUPERFAMILY Leucine zipper domain 69 98 IPR046347 GO:0003700|GO:0006355
Mtr5g2097 333 Pfam bZIP transcription factor 67 96 IPR004827 GO:0003700|GO:0006355
Mtr5g2097 333 Pfam Seed dormancy control 155 225 IPR025422 GO:0006351|GO:0043565
Mtr5g2097 333 ProSiteProfiles DOG1 domain profile. 136 321 IPR025422 GO:0006351|GO:0043565
Mtr5g2097 333 Coils Coil 147 167 - -
Mtr5g2097 333 MobiDBLite consensus disorder prediction 41 63 - -
Mtr5g2097 333 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 70 85 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g2097 Mtr-Chr5 26904094 26907060 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g2097 1 325 Calmodulin-binding Proteins AT1G22070 48.649 7.21e-108 318
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Mtr5g2097 DOG1 1.7e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g2097 K14431 - gmx:100775882 473.781
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g2097 5 26904094 26907060 Mtr5g2097 5 26904094 26907060 ECH
Mtr5g2097 5 26904094 26907060 Mtr3g2299 3 36663585 36666439 PCT