Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g2094 ATGTCTCTTCCTCTGCCACCTCGTGTGGACCCCAAAATATGGCAGATATGCGTTGGCCCCGACGTCAAGATTCCGAAGATTCACTCTAAAGTTTACTACTTCCCACGAGGTCATCTGGAACATGCATGTTCTTCCCCTACTGCTGCCACAAGAACCATTCTTGATCGTTACCGTTCATCCATTCCATGCATCGTCTCTTCCGTTGATCTCTTTGTTGATCCTCACACCGACGAGGTCTTTGCCAAACTGCTCCTGACTCCCGTAACTGACCAAGAACCCCCTCCTCCTGTAGTTCCCGGCCAAGAAGACGATGATGGAGACAATCTTGTTTCCTATGTCAAGACTCTCACACAATCTGATTGTACACGAGTATTATGCGTACCTATCGAATGCTCTAACTTGATCTTTCCAAAGCTTGATTTGGACAAGTCTCAGAGCATCACTGTCACCGACCTTAAAAACCAAGAATGGAGGTACACATATACCTATTCAAATTCCAGTAGATTACATACTGGCTGGTTAAACTTTGTACGAGAGAAGAAACTCGTCGCCAACGATTCTGTTGTTTTCATCAAAAACTCTGCCGGAAAGATATCTGTCGGAATTCGCAGGAACACCAAGTTCACTACAGATGAAGCGGCTGAAGGAAGCGAGAATTTAACTGATGAGATTAAGGTTTTGGATGCAGCGGAATTGGCGGAGAAGAACACAGCATTTGATGTTGTGTATTATCCGACAGCTAGTGGTTGGCGTGATTTTGTGGTGGATGCTAAGACTGTTGACGATGCCATGAAAATTGGTTGGAAATCTGGAATGAGAGTGAAGCTTCCTTTGAAGAAATATGAATCTTCAAATTCAAAGATGACAATTTCTCAGCTTAAGGGAACAATCTCTTTTGTCTTTAACCATTCTTCTAACGTCCCTAATTGGCGCATACTTGAGGTTAACTGGGATGGACTTGATATCCCGCAGATTCCAAACCTAGTCAATCCTTGGCAGGTTGAAGTTTACAACATACATGCACCTTCGACTTCCTCCTCCACCGTCAACAATCCTAGACTTGCTGAGAGTTCATCCCCCCAACAAATTCCATATTCAATGCCAGGGACGAGTGGTACTTTGCCTGACACATAG 1134 0.4436 MSLPLPPRVDPKIWQICVGPDVKIPKIHSKVYYFPRGHLEHACSSPTAATRTILDRYRSSIPCIVSSVDLFVDPHTDEVFAKLLLTPVTDQEPPPPVVPGQEDDDGDNLVSYVKTLTQSDCTRVLCVPIECSNLIFPKLDLDKSQSITVTDLKNQEWRYTYTYSNSSRLHTGWLNFVREKKLVANDSVVFIKNSAGKISVGIRRNTKFTTDEAAEGSENLTDEIKVLDAAELAEKNTAFDVVYYPTASGWRDFVVDAKTVDDAMKIGWKSGMRVKLPLKKYESSNSKMTISQLKGTISFVFNHSSNVPNWRILEVNWDGLDIPQIPNLVNPWQVEVYNIHAPSTSSSTVNNPRLAESSSPQQIPYSMPGTSGTLPDT* 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g2094 377 Pfam B3 DNA binding domain 113 205 IPR003340 GO:0003677
Mtr5g2094 377 Gene3D - 268 342 - -
Mtr5g2094 377 ProSiteProfiles B3 DNA-binding domain profile. 110 206 IPR003340 GO:0003677
Mtr5g2094 377 Pfam Auxin response factor 229 313 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Mtr5g2094 377 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 5 350 IPR044835 GO:0003677|GO:0006355|GO:0009725
Mtr5g2094 377 SUPERFAMILY DNA-binding pseudobarrel domain 108 205 IPR015300 -
Mtr5g2094 377 Gene3D - 110 206 IPR015300 -
Mtr5g2094 377 PANTHER AUXIN RESPONSE FACTOR 17 5 350 - -
Mtr5g2094 377 CDD B3_DNA 111 204 IPR003340 GO:0003677
Mtr5g2094 377 SMART B3_2 112 206 IPR003340 GO:0003677
Mtr5g2094 377 MobiDBLite consensus disorder prediction 343 377 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g2094 Mtr-Chr5 26839097 26840665 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g2094 8 336 B3 DNA Binding Superfamily AT1G77850 35.733 1.06e-64 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Mtr5g2094 B3 3.8e-11 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g2094 - - mtr:MTR_5g060780 748.814