Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g2092 ATGTCTCTGCCTCAGCCACGCCGTGTGGACTCCAAAATATGGCAAATACGCGCTGGACCTGCTGTCAAGATTCCGAAGATTGGCTCAAAAGTCTACTACTTCTCAGAAGGCCACTTGGAACATGCTTGTTCATCCCCTAACATTGAAACAGAGCTCCTTCTATGTCTTCGCCCTCCATCCGTTCTCTGCATCATCTCATCTGTTGATCTTCTGGCAAATCTTCACACCGATGAAGTCTTTGCGAAACTGCTCCTTACTCCGGTAACAACTGATGGTAGTGTCCAAATCCAAGAACCAGCTCCTCCTGACTTTCCCGATAAAGAAGAAAACGATGGAAACAATCTTGTTGTCCAAGTCCAAGAACCAGCTCCTCCTGAGGTTCCCGATGAAGAAGACGATGATAGCAACAATCTTGTTTCCTATGTAAAGATTCTCACCCAATCTGATACTCAAAGTGGACTTTTTGTACCTCGTGAATGCATGGAATTGATCTTTCCCAATCTTGACTTGGAGGATCCAATGCAGTCTGAGAAGCTCTCAGTCACCGACATTCAAGACGTAGTCTGGACGTACAAATATAGCTACCACGTGAAGAAACTCAATAGCTACAAGTTCACTACTGGTTGGTCACAATTTGTGAGGAAGAAGAAACTTGTTGCTCTTGATTCTGTTGTTTTCATCAAAAACTCTGCCGGAAAGATATTTGTCGGAATTTGCAGGAAGGCTATGTACCCTGCAACTGAAGAGGAAGGTGGGAAAAGTGAGAATTTAACGGAGAAGGCAGTTAAAGATGCTGTGGAATTGGCTGGGAAGAACATGGCATTTCAAGTTGTGTATTATCCGACGGCTAATTGGTGTGATTTTGTGGTGGATGCGAGTGTTGTTGATGAGGCTATGAAGAATGGTTGGGAATTTGGAATGGGAATCAAGCTTCGTTTGAATGAATTTGCATCTTCAAATTCAAAGAAGACATATTATCAGCCTAAGGGGACAATCTCTAACATGTCTAACGTTCCTTCTAATGTTCCTAGCTGGCGTATGCTTCAGGTTAACTGGGATGGTCCCGATATCTCGCAGAATCCAAACCGCGTCAATCCTTGGCAAGTTGATATTTATCCTATACCTTCTCAAAGTTCTTCCCCCCTACAAATGCCACATTCTTATCCTCCAATTCCACCGCCTCTATTACCATTTCCCCCAACAAAAAGTCCTAGACTTTCTCAGAGTTCTTCCCCCCTACAAATGCCATTCTCTTATCCTCCAACTCCACCACCTCTATTACAGTCTTCTATGTCAACTTCCTCCTTCATCCCTATGACAGAGCTCCCTTATTCAACAATTGGATCCTTGAACCAAACATTGTTGAATTCTGATACTTTTCCAGACGGCATGCTGGGAGCCAGCCATGACCATTTATCTGCATCAGATTTGTCAAAAGTTTTGAGTGATAAGGGTGATGGTTTCAATAGGAACAGATCTATGGTAGGGTGGAGTGGTACTTTGTGTGACACGGAGCCTCGTAACCATAATAGTTTGAACTCCTTTGGGACCAATGAACCATGCACCAAGTGA 1572 0.437 MSLPQPRRVDSKIWQIRAGPAVKIPKIGSKVYYFSEGHLEHACSSPNIETELLLCLRPPSVLCIISSVDLLANLHTDEVFAKLLLTPVTTDGSVQIQEPAPPDFPDKEENDGNNLVVQVQEPAPPEVPDEEDDDSNNLVSYVKILTQSDTQSGLFVPRECMELIFPNLDLEDPMQSEKLSVTDIQDVVWTYKYSYHVKKLNSYKFTTGWSQFVRKKKLVALDSVVFIKNSAGKIFVGICRKAMYPATEEEGGKSENLTEKAVKDAVELAGKNMAFQVVYYPTANWCDFVVDASVVDEAMKNGWEFGMGIKLRLNEFASSNSKKTYYQPKGTISNMSNVPSNVPSWRMLQVNWDGPDISQNPNRVNPWQVDIYPIPSQSSSPLQMPHSYPPIPPPLLPFPPTKSPRLSQSSSPLQMPFSYPPTPPPLLQSSMSTSSFIPMTELPYSTIGSLNQTLLNSDTFPDGMLGASHDHLSASDLSKVLSDKGDGFNRNRSMVGWSGTLCDTEPRNHNSLNSFGTNEPCTK* 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g2092 523 PANTHER AUXIN RESPONSE FACTOR 17 5 429 - -
Mtr5g2092 523 SMART B3_2 141 242 IPR003340 GO:0003677
Mtr5g2092 523 Pfam Auxin response factor 265 349 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Mtr5g2092 523 ProSiteProfiles B3 DNA-binding domain profile. 139 242 IPR003340 GO:0003677
Mtr5g2092 523 Pfam B3 DNA binding domain 142 241 IPR003340 GO:0003677
Mtr5g2092 523 Gene3D - 139 242 IPR015300 -
Mtr5g2092 523 CDD B3_DNA 140 240 IPR003340 GO:0003677
Mtr5g2092 523 SUPERFAMILY DNA-binding pseudobarrel domain 137 241 IPR015300 -
Mtr5g2092 523 Gene3D - 303 378 - -
Mtr5g2092 523 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 5 429 IPR044835 GO:0003677|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g2092 Mtr-Chr5 26763099 26765744 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g2092 7 467 B3 DNA Binding Superfamily AT1G77850 32.932 1.85e-66 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Mtr5g2092 B3 1.3e-13 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g2092 - - mtr:MTR_5g060630 985.326