Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g2084 ATGGATCATGTGTGGGATGATGGTTTTGTTGATTTAACGATTGATGATATTAGGGTTTTGATTGGAGATACTCCGAAAGCAAAGGATGGGTATGCGGGGTCTAAGTTTATTTTCTGTAGTGGCGGGCTGATGAAGAAGAGAGAAGAAGAGGAAGAGGAAGAGAAGGTAGATGAAGTAGAAGAAAAAGGGGAAGCTGATGAAGTGGGATTGAAGATAGAAGAAGAGGAAAATGGTGACATTATTGGTGAGTTTTCGAGGCCGTGTTCGTTTACTACTTCACAAGAAGATGATTCATCTAGCACGACGACGGATACTAGGTCGAATAGTATATCTCCTAATGTGAGATTGAAGCCTGTAATTACTCCTGGGAGTTGGCAAAAGGGTGAGCTTTTGGGCCGTGGTTCATTTGGAACTGTATATGAAGGAATTTCTGAAGATGGATTCTTTTTTGCTGTAAAACAAGTTTCACTGCTTGATCAAGGGAGTCAGGGAAAGCAAAGTGTCGTTCAACTGGAGCACGAAATTGCACTTCTGAGTCAGTTTGAACATGAGAATATTGTTCGATACATTGGCACTGAAATGGATGAATCAAATCTATATATTTTTATCGAGTTTGTAACCAAAGGTTCCCTTTTAAGCCTCTACCGGAGGTATAAACTTCGAGATTCCCAAGTATCTGCTTATACGAGACAGATTCTGCATGGTTTGAAGTATCTTCATGATCGCAATATTGTTCACAGGGATATTAAATGTGCAAATATATTGGTTGATGCGAATGGATCTGTCAAGGTTGCAGATTTTGGATTAGCAAAGGCAATTAAACTGAATGATGTTAAATCATGCCAAGGAACAGCATTCTGGATGGCACCAGAGGTTGTAAGAGGAAAAGTTAAAGGTTATGGACTTCCGGCTGATATATGGAGTCTAGGATGCACTGTGTTGGAGATGTTAACTGGGCAAGTTCCATACGCTCCTATGGAATGTATCAGCGCAATGTTTAGAATTGGAAAAGGTGAACTACCTCCCGTGCCTGATACTCTTTCAAGAGATGCACGCGATTTTATTCTGCAGTGTCTTAAAGTTAATCCAGATGATCGTCCCACTGCGGCTCAACTCTTAGACCACAAATTTGTCCAGAGGTCATTCTCCCAGTCCTCTGGCTCAGCGTCTCCACATATTCCGAGAAGAAGTTAA 1194 0.4121 MDHVWDDGFVDLTIDDIRVLIGDTPKAKDGYAGSKFIFCSGGLMKKREEEEEEEKVDEVEEKGEADEVGLKIEEEENGDIIGEFSRPCSFTTSQEDDSSSTTTDTRSNSISPNVRLKPVITPGSWQKGELLGRGSFGTVYEGISEDGFFFAVKQVSLLDQGSQGKQSVVQLEHEIALLSQFEHENIVRYIGTEMDESNLYIFIEFVTKGSLLSLYRRYKLRDSQVSAYTRQILHGLKYLHDRNIVHRDIKCANILVDANGSVKVADFGLAKAIKLNDVKSCQGTAFWMAPEVVRGKVKGYGLPADIWSLGCTVLEMLTGQVPYAPMECISAMFRIGKGELPPVPDTLSRDARDFILQCLKVNPDDRPTAAQLLDHKFVQRSFSQSSGSASPHIPRRS* 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g2084 397 ProSiteProfiles Protein kinase domain profile. 125 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr5g2084 397 MobiDBLite consensus disorder prediction 47 115 - -
Mtr5g2084 397 PANTHER MAP KINASE KINASE KINASE-LIKE PROTEIN 43 391 - -
Mtr5g2084 397 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 43 391 - -
Mtr5g2084 397 SMART serkin_6 125 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr5g2084 397 MobiDBLite consensus disorder prediction 62 81 - -
Mtr5g2084 397 SUPERFAMILY Protein kinase-like (PK-like) 103 383 IPR011009 -
Mtr5g2084 397 Pfam Protein kinase domain 126 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr5g2084 397 ProSitePatterns Serine/Threonine protein kinases active-site signature. 244 256 IPR008271 GO:0004672|GO:0006468
Mtr5g2084 397 ProSitePatterns Protein kinases ATP-binding region signature. 131 153 IPR017441 GO:0005524
Mtr5g2084 397 Gene3D Transferase(Phosphotransferase) domain 1 123 393 - -
Mtr5g2084 397 PRINTS Tyrosine kinase catalytic domain signature 203 216 IPR001245 GO:0004672|GO:0006468
Mtr5g2084 397 PRINTS Tyrosine kinase catalytic domain signature 238 256 IPR001245 GO:0004672|GO:0006468
Mtr5g2084 397 PRINTS Tyrosine kinase catalytic domain signature 304 326 IPR001245 GO:0004672|GO:0006468
Mtr5g2084 397 PRINTS Tyrosine kinase catalytic domain signature 347 369 IPR001245 GO:0004672|GO:0006468
Mtr5g2084 397 MobiDBLite consensus disorder prediction 86 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g2084 Mtr-Chr5 26589084 26596779 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g2084 88 382 MAP Kinase Kinase Kinase AT4G08500 69.257 2.78e-140 411
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Mtr5g2084 Pkinase 6.8e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g2084 K13414 - mtr:MTR_5g059880 558.14