Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g2082 ATGGCAACGCCAACTACACACATCAAGTTCAAGACCGCTCTTCTTTTACTTCTCAGTTTTCATCTTCTTCTTCTTCCTCTTCCCAACATAGTTCCCTGTTACAACCATCACTTTCTTAAGCTTGTTCAACCTTTTACTCATTTTGATATAGATATTAAAAAAAAATATTGGAAAAAATCTGGTGTGGTTATAAACACACCATGCCTTATGGTGGATCTATCCCTGGTTGTGGACGACACATGGTCAACCTGGGATCATTTGAGAGAAGAGAAGAAGATAGATGAAGTAGAAGAAAAATGGGAAGTTGGTGAAGTGGGAAACCAAAGGGATACTTGCTCGAATTGTACATTTTCTAATCTGAGATTGATGCCAGTTATTACTCCTGGGAGTTGGGAAAAGGGTGAACTTTTGGGTAGTGGTTCGTTTGGATTTGTATATGAAGGAATTTCTCAAGATGGATTCTTTTTTGCTGTAAAACAAGCTTCATTGCTTGATCAAGGGATTCGGGGAAAGCAAAGTGTTTTTCAATTGGAGCACGAAATTGCACTTCTGAGTCAGTTTGAACACGAGAATATTGTTCGATACATTGGCACTGAAATGGATGAATCAAATCTATATATCTTTATCGAGTTGGTAACCAAAGGTTCCCTTTTACGCCTCTACCAGAGGTATAAACTTCGAGATTCCCAAGTTTCTGCTTATACGAGACAGATTCTGCATGGTTTGAAGTATCTTCATGATCGCAATATTGTTCACAGGGATATTAAATGTGCAAATATATTGGTTGATGCAAATGGATCTGTCAAAGTTGCAGATTTTGGATTGGCAAAGGTAACTATATTGAATGATATTAAATCATGCCATGGAACAGCATTCTGGATGGCACCAGAGGTTGTAAATGGAAAAGTTAACGGTTATGGACTTCCGGCTGATATATGGAGTCTAGGATGCACTGTGTTGGAGATGTTAACTGGGCAAGTTCCATACTATTCTTTGGAATGGGTCAGCGCAATGTTTAAAATTGCACATGGTGAACTACCTCCAGTGCCTGATACTCTTTCAAGAGATGCACGTGATTTCATCCTGCAGTCTCTTAAAGTTAATCCAGATGACCGTCCCACTGCGGCTCAACTCTTAGACGACAAATTTGTCCAGATGTCATTCTCCCAGTCCTCTGGCTCAGCGTCTCAACATATTCCGAGAAGAGGTTATTAA 1215 0.3959 MATPTTHIKFKTALLLLLSFHLLLLPLPNIVPCYNHHFLKLVQPFTHFDIDIKKKYWKKSGVVINTPCLMVDLSLVVDDTWSTWDHLREEKKIDEVEEKWEVGEVGNQRDTCSNCTFSNLRLMPVITPGSWEKGELLGSGSFGFVYEGISQDGFFFAVKQASLLDQGIRGKQSVFQLEHEIALLSQFEHENIVRYIGTEMDESNLYIFIELVTKGSLLRLYQRYKLRDSQVSAYTRQILHGLKYLHDRNIVHRDIKCANILVDANGSVKVADFGLAKVTILNDIKSCHGTAFWMAPEVVNGKVNGYGLPADIWSLGCTVLEMLTGQVPYYSLEWVSAMFKIAHGELPPVPDTLSRDARDFILQSLKVNPDDRPTAAQLLDDKFVQMSFSQSSGSASQHIPRRGY* 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g2082 404 Pfam Protein kinase domain 132 383 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr5g2082 404 Gene3D Transferase(Phosphotransferase) domain 1 129 401 - -
Mtr5g2082 404 PANTHER MAP KINASE KINASE KINASE-LIKE PROTEIN 33 397 - -
Mtr5g2082 404 ProSitePatterns Protein kinases ATP-binding region signature. 137 159 IPR017441 GO:0005524
Mtr5g2082 404 SMART serkin_6 131 384 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr5g2082 404 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 33 397 - -
Mtr5g2082 404 ProSiteProfiles Protein kinase domain profile. 131 384 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr5g2082 404 ProSitePatterns Serine/Threonine protein kinases active-site signature. 250 262 IPR008271 GO:0004672|GO:0006468
Mtr5g2082 404 SUPERFAMILY Protein kinase-like (PK-like) 120 385 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g2082 Mtr-Chr5 26573641 26579559 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g2082 106 385 MAP Kinase Kinase Kinase AT4G08500 67.972 1.64e-128 381
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Mtr5g2082 Pkinase 9.9e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g2082 K13414 - mtr:MTR_5g059910 801.586
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g2082 5 26573641 26579559 Mtr5g2082 5 26573641 26579559 ECH