Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g2080 ATGACCTGTATCGCTCCGGGAGTTTCCCTTCGACTTGAAGGTGTTGACGGAGAATTTGATATTATATGTCGGAGTTTAGGGTTGTCTGGACCGGAGGATTTCTCCATTCCGGCGGCGGCTTGGGAGGCGATGAAGGCTCGGTCTTCGTCCGAACTCAATTCCGGCAGCAGTGGTATTAAAGGAGTTAGTCCGTCTATGCTTAAGCCGCCACCAGGGGTTGTGGTTTCTGCTGTGGATGACATGTGTTCGAAGTGGGATATACTGAGAGATTTAGCTCCGGAAGGGGAAAGAAAAGAGGGAGAAGAAGAGGAAGAGAAAGAGAAGATAGATGAAATAGAAGAAAAATGGGAAGTTGGTGAAGTGGCAAAGAAAAGAGGAGAGACTAGCTCGACATGCTCATCGTGGGATCTATTGAGGAATTCTATTTCTAGCTCAACATGCTCAACATGGGATCTTTTGATGGATCTTTCTTCGGAAGGGGAAGTTGGTGAAGTGGCAAACCAAAGGGGGGATACTAGGTCGAATAGTATATTTTCTAATGTGAGATTGAAGTCACTTATTACTCCCGGGAGTTGGCAAAAGGGTGAGCTTTTGGGCCGCGGTTCATTTGGAACTGTATATGAAGGAATTTCTGAAGATGGATTCTTTTTTGCTGTAAAACAAGTTTCACTGCTTGATCATGGGAGTCAGGGAAAGCGAAGTGTCGTTCAACTGGAGCACGAAATTGCACTTCTGAGTCAGTTTGAACATGAGAATATTGTTCGATACATTGGCACTGAAATGGATGAATCAAATCTATATATCTTTATCGAGTTTGTAACCAAAGGTTCCCTTTTAAGCCTATATCGGAGGTATAAACTTCGAGATTCCCAAGTATCTGCTTATACGAGACAGATTCTGCATGGTTTGAAGTATCTTCATGATCGCAATGTTGTTCACAGGGATATTAAATGTGCAAATATATTGGTTGATGCAAATGGATCTGTCAAGGTTGCAGATTTTGGATTAGCAAAGGCAATTAAACTGAATGATGTTAAATCATGCCAAGGAACACCATTCTGGATGGCACCAGAGGTTGTAAGAGGAAAAGTTAAAGGTTATGGACTTCCGGCTGATATATGGAGTCTAGGATGCACTGTGTTGGAGATGTTAACTGGGCAAGTTCCATACTCTCCTATGGAACGTATCAGCGCAATGTTTAGAATTGGAAAAGGTGAACTACCTCCAGTGCCTGATACTCTTTCAAGAGATGCACGCGATTTTATTCTGCAGTGTCTTAAAGTTAATCCAGATGATCGTCCCACTGCGGCTCAACTCTTAGATCACAAATTTGTCCAGAGGTCATTCTCCCAGTCCTCTGGCTCAGCGTCTCCACATATTCCGAGAAGAAGTTAA 1395 0.4323 MTCIAPGVSLRLEGVDGEFDIICRSLGLSGPEDFSIPAAAWEAMKARSSSELNSGSSGIKGVSPSMLKPPPGVVVSAVDDMCSKWDILRDLAPEGERKEGEEEEEKEKIDEIEEKWEVGEVAKKRGETSSTCSSWDLLRNSISSSTCSTWDLLMDLSSEGEVGEVANQRGDTRSNSIFSNVRLKSLITPGSWQKGELLGRGSFGTVYEGISEDGFFFAVKQVSLLDHGSQGKRSVVQLEHEIALLSQFEHENIVRYIGTEMDESNLYIFIEFVTKGSLLSLYRRYKLRDSQVSAYTRQILHGLKYLHDRNVVHRDIKCANILVDANGSVKVADFGLAKAIKLNDVKSCQGTPFWMAPEVVRGKVKGYGLPADIWSLGCTVLEMLTGQVPYSPMERISAMFRIGKGELPPVPDTLSRDARDFILQCLKVNPDDRPTAAQLLDHKFVQRSFSQSSGSASPHIPRRS* 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g2080 464 Pfam Protein kinase domain 193 445 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr5g2080 464 ProSitePatterns Serine/Threonine protein kinases active-site signature. 311 323 IPR008271 GO:0004672|GO:0006468
Mtr5g2080 464 ProSitePatterns Protein kinases ATP-binding region signature. 198 220 IPR017441 GO:0005524
Mtr5g2080 464 PANTHER MAP KINASE KINASE KINASE-LIKE PROTEIN 1 458 - -
Mtr5g2080 464 Gene3D Transferase(Phosphotransferase) domain 1 190 460 - -
Mtr5g2080 464 PRINTS Tyrosine kinase catalytic domain signature 270 283 IPR001245 GO:0004672|GO:0006468
Mtr5g2080 464 PRINTS Tyrosine kinase catalytic domain signature 305 323 IPR001245 GO:0004672|GO:0006468
Mtr5g2080 464 PRINTS Tyrosine kinase catalytic domain signature 371 393 IPR001245 GO:0004672|GO:0006468
Mtr5g2080 464 PRINTS Tyrosine kinase catalytic domain signature 414 436 IPR001245 GO:0004672|GO:0006468
Mtr5g2080 464 ProSiteProfiles Protein kinase domain profile. 192 445 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr5g2080 464 SUPERFAMILY Protein kinase-like (PK-like) 180 450 IPR011009 -
Mtr5g2080 464 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 1 458 - -
Mtr5g2080 464 Coils Coil 95 115 - -
Mtr5g2080 464 SMART serkin_6 192 445 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g2080 Mtr-Chr5 26564200 26579796 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g2080 8 52 MAP Kinase Kinase Kinase AT4G08500 55.556 8.45e-07 49.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Mtr5g2080 Pkinase 4.6e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g2080 K13414 - mtr:MTR_5g059880 878.626
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g2080 5 26564200 26579796 Mtr3g2284 3 36509953 36517644 PCT