Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g2060 ATGAACATGGAGATTCATGACATGGATATTGACATTGACATGATCATGGATGTTGTCCCAGATTTCCTAGAATTCTCTAATCAAAGTAACACTACCACCCCACCCACTTCTGATGACGACACCACTTGGTCCCCTCTCCTTGATTTGGATTTCTTCACCACCAACCAAGATGATTTTCACAACTTCATTGATTCACTCACCAACGACGAAATCACACCCGTTGCTCCAAATCTAGATAACAAGGTTGTAGAGCAAGATGATGAAGAAGAAGAAGAAGATGGATCCATGGGAGACATGTCCAACTCAAATTCTACGACGGAGGAGGAGGAGGACGACAGAAAGGGCCTCCGTCTAGTGCACCTCCTTATGGCGGCAGCGGAGGCCTTAACAGGCACAAACAAGAGTCACCATCTGGCTCAAGTGATATTGATTCGGCTCAAGGACTTAGTGTCCTCCACTCACGGCACCAACATGGAGAGACTCGCTGCGTATTTCACCGACGCCCTCCAAACTCTGCTAAATGGCACCGACTGTGGTGGTCACCACAAACTCTGCCTACTCACTGGACCGCACCAAACAGACATACTCTCGGCCTTTCAGCTTCTTCAAGACATGTCTCCTTACGTTAAGTTTGCTCATTTCACGGCAAACCAAGCCATCCTTGAAGCTGTAACTCATGAAAGAAGGGTTCACATAGTGGACTTTGATATCATGGAAGGGGCGCAATGGGCTTCACTCATTCAATCACTTTCATCGCGAAAAGAAGGCCTACCGGGCCCACATCTTCGCATCACTGCATTATCTAGAAACAAAGAACGTGGCAATGGACGATCTAGATCGTCCTTTGCCACTGTTCAAGAAACTGGAAGAAGGTTAACAACCTTTGCTGCTTCCGTTGGACAACCGTTCACTTTTCATCAATGTAGGTTGGAATCAGACGAAAGGTTTCGAACCTCTTCATTAAAGCTTGTTCGTGGTGAGGCTTTGGTGTTTAACTGTGTCATGCATTTGCCTCATCTTAGTTACCGGGCTTCAGATTCTATTGCTTCCTTCTTGAACGGTGCCAAGGAGTTAGGAACAAAGCTCGTGACATTAGTCGAGGAGGAAGTAGGGCCCATCACTGATGCAGGCTTTGTGGGTTTGTTCATGGATTCATTACATCGTTATTCTGCCATGTATGACTCGTTCGAGGCTGGGTTTCCTATGAATAAATGGGCTAGGAGTTTAGTGGAGCAAGTATTTTTAGGCCCAAGAATAATGGGCTCAGTGGCCCAGTTGTACATGACTGGTGAAGAGGAGGAGCAAGAGAGGGGTTCTTGGGGGGAGTGGTTGGGTGTGGAAGGGTTCAGAGGAGTTAACATAAGCTATGGTAACCATTGTCAAGCAAAGTTGTTATTGGGTTTATTTAACGATGGGTATAGGGTGGAAGAGTTGGGTAACAATAAGTTGGTGTTAGGTTGGAAATCAAGACGTTTGCTTTCTGCTTCTGTTTGGACTTGTATGTCAGAGATTGAATATGATTTTTAA 1527 0.4578 MNMEIHDMDIDIDMIMDVVPDFLEFSNQSNTTTPPTSDDDTTWSPLLDLDFFTTNQDDFHNFIDSLTNDEITPVAPNLDNKVVEQDDEEEEEDGSMGDMSNSNSTTEEEEDDRKGLRLVHLLMAAAEALTGTNKSHHLAQVILIRLKDLVSSTHGTNMERLAAYFTDALQTLLNGTDCGGHHKLCLLTGPHQTDILSAFQLLQDMSPYVKFAHFTANQAILEAVTHERRVHIVDFDIMEGAQWASLIQSLSSRKEGLPGPHLRITALSRNKERGNGRSRSSFATVQETGRRLTTFAASVGQPFTFHQCRLESDERFRTSSLKLVRGEALVFNCVMHLPHLSYRASDSIASFLNGAKELGTKLVTLVEEEVGPITDAGFVGLFMDSLHRYSAMYDSFEAGFPMNKWARSLVEQVFLGPRIMGSVAQLYMTGEEEEQERGSWGEWLGVEGFRGVNISYGNHCQAKLLLGLFNDGYRVEELGNNKLVLGWKSRRLLSASVWTCMSEIEYDF* 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g2060 508 MobiDBLite consensus disorder prediction 73 113 - -
Mtr5g2060 508 Pfam GRAS domain family 118 499 IPR005202 -
Mtr5g2060 508 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 28 500 IPR005202 -
Mtr5g2060 508 ProSiteProfiles GRAS family profile. 109 499 IPR005202 -
Mtr5g2060 508 PANTHER SCARECROW-LIKE PROTEIN 26 28 500 IPR030028 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g2060 Mtr-Chr5 26072766 26074427 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g2060 69 502 GRAS Transcription Factor Family AT3G54220 35.080 3.19e-56 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Mtr5g2060 GRAS 1.4e-99 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g2060 - - cit:102620887 581.252
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g2060 5 26072766 26074427 Mtr5g2060 5 26072766 26074427 ECH