Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g2058 ATGAAAGTCTCACTCTATAAATACATCTTCTTTACTTCCCCAAATTCAGTACCAATTGCATCATTCACTCTCCACTTTGAAAACATCACCAACAAAACAAAAAGTCACACACACATTAAAAAGAGAGAAACCCCTTCAACACACACCCTTAAAAAAACATTTTTGCATCCATTTATCATGGTTAAGACAGAGATCAACAAGATCAACAAGGAAAAACCAAAACCAAAGCCAATGCAACAACATGTTTTATCAACAAAAGCAGCATCAAATGATAAGAAGAAAAAATACAAAGGAGTAAGAATGAGAAGTTGGGGTTCTTGGGTATCAGAAATAAGAGCACCAAATCAAAAAACAAGAATATGGTTAGGTTCTTATTCAACTGCAGAAGCTGCTGCAAGAGCCTATGATGCTGCACTTTTATGCCTTAAAGGTTCATCTGCAACAAATCTTAACTTCCCTTTAGAAACTTCTTCACATTTCATTCCTCAAGAGAATATTTCTATGTCACCTAAATCTATTCAAAGAGTAGCTGCTGCTGCTGCTGCTGCTTCTTCTTCTTCTTCTTCTAGTAACAATGATGTTACTAATACTATTAGCACCCCACCAACTTCATCATCCTCATTAGTTTCATCTCCATCAATGTCATCTTCTCCTTCTGATCAAATTGATGATGATGTTTCACTTTTTTCATCTTTTGGGGCCTGTGATGATCATTATCAAGCTAATGATCAATCAATGGCTATGATGGATTCTTGGTATGGATTTGATGGTTTATTACAATCACCAAAACATGTTGATCAAATGCTAAGTGGTTCTTTGTTTGATATTGATTCAACTCAAGTACTTCTTGATGATTGGTATGAAGAAGGTGACATTAGTTTGTGGAGCTTCTACTAA 897 0.3523 MKVSLYKYIFFTSPNSVPIASFTLHFENITNKTKSHTHIKKRETPSTHTLKKTFLHPFIMVKTEINKINKEKPKPKPMQQHVLSTKAASNDKKKKYKGVRMRSWGSWVSEIRAPNQKTRIWLGSYSTAEAAARAYDAALLCLKGSSATNLNFPLETSSHFIPQENISMSPKSIQRVAAAAAAASSSSSSSNNDVTNTISTPPTSSSSLVSSPSMSSSPSDQIDDDVSLFSSFGACDDHYQANDQSMAMMDSWYGFDGLLQSPKHVDQMLSGSLFDIDSTQVLLDDWYEEGDISLWSFY* 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g2058 298 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 73 297 - -
Mtr5g2058 298 PRINTS Ethylene responsive element binding protein signature 96 107 IPR001471 GO:0003700|GO:0006355
Mtr5g2058 298 PRINTS Ethylene responsive element binding protein signature 118 134 IPR001471 GO:0003700|GO:0006355
Mtr5g2058 298 SUPERFAMILY DNA-binding domain 95 154 IPR016177 GO:0003677
Mtr5g2058 298 CDD AP2 94 153 IPR001471 GO:0003700|GO:0006355
Mtr5g2058 298 Pfam AP2 domain 95 144 IPR001471 GO:0003700|GO:0006355
Mtr5g2058 298 Gene3D AP2/ERF domain 94 155 IPR036955 GO:0003700|GO:0006355
Mtr5g2058 298 ProSiteProfiles AP2/ERF domain profile. 95 153 IPR001471 GO:0003700|GO:0006355
Mtr5g2058 298 MobiDBLite consensus disorder prediction 184 221 - -
Mtr5g2058 298 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF014 73 297 - -
Mtr5g2058 298 SMART rav1_2 95 159 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g2058 Mtr-Chr5 25975510 25976678 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g2058 96 297 AP2-EREBP Transcription Factor Family AT1G21910 50.000 3.35e-45 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Mtr5g2058 AP2 7.2e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g2058 - - mtr:MTR_5g058470 512.301
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g2058 5 25975510 25976678 Mtr5g2058 5 25975510 25976678 ECH