Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g2044 ATGGGTCCACCAAGTCACAAATCACATGTCTCCAAAAGAACAAGAAGGTTAAGAATTATCTATGATGACCCAGATGCAACAGATTCATCATCAGATGAAGAAAATCATTATGTCCAGGAACAAGGTAAGAGGAAGAGATGTGTGCTTGAACTTGCCATCCCTAATTCTTCCATTAACGCTGTTTGTCCGGTTGAAACAGTGACGGATAAGAATAAGAGTCGTACAAAACCAAAACCTATAGTTAGACAACCTTCTTGCAAATATAAAGGTGTTCGAATGAGGAAATGGGGTAAATTTGCTGCTGAAATTCGTAACCCATTCAAGGGTACACGCGAATGGCTGGGAACCTTTGACACAGCTGAAGCGGCTTCACATGCATATCAAACTAAAAGACATGAATTTCAAGTCATTGCTAATCGGCGGTTGGCTTATGAGAAGAGCCGCAAGAGTTTCAAGAATGTTGTTTCTAAAAAATCAAAGATTGGTATGTTACATAAATCTTCATCTTCATCTTCGCCCGGCTTAGTTAATCGCGTTCCTAAATTGGTTGAGAGGGCTAAGATTTCATGTAATGAACCTATTGTTGAGAGTCTAAGTCTTTTGGTACAGAAACCGAATGTCGTTGAGGATTCGGATATGACATTGCTTGAATCGGATTGGTTAATATTTGATGGTTTAGGGCAGGGTTTGGATGATCTTGGTTGCCTTGATGACCTTCAACTATTTGATTTTGATATGAATGAAGCAATTGATTTTTCAAATTTTAACTTTTATGAGTTTGAGTCAAATAATTTTCTTGATGATGTTGGTGCTGATTATGTTGATGTTGATGCTGAATCTGTTGACGAAGATGAGATTGCTAGCTGGATTGAAGAACCCTATAATACACCGTCTCCATAA 900 0.3822 MGPPSHKSHVSKRTRRLRIIYDDPDATDSSSDEENHYVQEQGKRKRCVLELAIPNSSINAVCPVETVTDKNKSRTKPKPIVRQPSCKYKGVRMRKWGKFAAEIRNPFKGTREWLGTFDTAEAASHAYQTKRHEFQVIANRRLAYEKSRKSFKNVVSKKSKIGMLHKSSSSSSPGLVNRVPKLVERAKISCNEPIVESLSLLVQKPNVVEDSDMTLLESDWLIFDGLGQGLDDLGCLDDLQLFDFDMNEAIDFSNFNFYEFESNNFLDDVGADYVDVDAESVDEDEIASWIEEPYNTPSP* 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g2044 299 SUPERFAMILY DNA-binding domain 87 133 IPR016177 GO:0003677
Mtr5g2044 299 SMART rav1_2 87 141 IPR001471 GO:0003700|GO:0006355
Mtr5g2044 299 MobiDBLite consensus disorder prediction 1 35 - -
Mtr5g2044 299 Gene3D AP2/ERF domain 86 140 IPR036955 GO:0003700|GO:0006355
Mtr5g2044 299 PANTHER AP2 DOMAIN TRANSCRIPTION FACTOR-LIKE PROTEIN 3 211 - -
Mtr5g2044 299 CDD AP2 86 127 IPR001471 GO:0003700|GO:0006355
Mtr5g2044 299 MobiDBLite consensus disorder prediction 15 35 - -
Mtr5g2044 299 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 3 211 - -
Mtr5g2044 299 Pfam AP2 domain 86 128 IPR001471 GO:0003700|GO:0006355
Mtr5g2044 299 PIRSF PTI6 207 273 IPR017392 GO:0003700
Mtr5g2044 299 PIRSF PTI6 237 291 IPR017392 GO:0003700
Mtr5g2044 299 PIRSF PTI6 3 181 IPR017392 GO:0003700
Mtr5g2044 299 PRINTS Ethylene responsive element binding protein signature 88 99 IPR001471 GO:0003700|GO:0006355
Mtr5g2044 299 PRINTS Ethylene responsive element binding protein signature 110 126 IPR001471 GO:0003700|GO:0006355
Mtr5g2044 299 ProSiteProfiles AP2/ERF domain profile. 87 145 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g2044 Mtr-Chr5 25669379 25670278 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g2044 15 267 AP2-EREBP Transcription Factor Family AT1G68550 33.929 1.29e-26 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Mtr5g2044 AP2 2.1e-08 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g2044 - - mtr:MTR_5g057647 532.332