Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g2000 ATGGAAGATCAAATCCACAACAACACAAAAAGAATAAACACTAATTCAAATTCAACCACGTGCTTAAAACTCTTTGGTTTCAGTGTTCAAGAAGAAAACGAAGACTCATCACCACCACCACCACGACAGCCACCACTTGAAGACGGTACAGGAAATACTTCACCGTCTGGTTCAACGGAATCCGTCAGCGGAGACGGTGGAGCATCAAGTATAAACCCTACCTCCGGTGACCGGAAATACGAGTGTCAATATTGTTGTCGAGAATTTGCAAACTCGCAAGCCCTAGGTGGACACCAAAACGCACACAAAAAAGAGCGCCAACAACTCAAACGAGCACAGTTACAAGCTTCAAGAAACGCTGCCGTTTCGTTTGTTCGAAACCCGATTATCTCCGCCTTTGCTCCGCCACATCATCTGCTCTCATCACCGGGACAAGTTATGATGCCTACTGCTCCTCCGTCGTGGGTTTACATGCCACCACGTGCTGCACCACCTCCTTTTCATGTCTCAGTTTCACATGGTTGTGCTTTTCCATCGCAAAACAACAGTAACAATGGTAATAGTTATAGTATTATAACGGGTGCAAGATCTGCTAGTGCAGGTGTGTTACCGTGTGTTAGTGGTGTAGGGAATTCTTCACCCACATTGTCAACTATGGGCTCACAAATACAGAGCCTGGCCCAGTTTGGGAAACTTGATGGGCCATCTTTGAGTAGGTTCTCAAAAGGAGATGTGGGGCCCAACTTTGATGAAGGATTTGGTTTAGATTTGCATCTTAGCCTAGCTCCACCGTGA 795 0.4616 MEDQIHNNTKRINTNSNSTTCLKLFGFSVQEENEDSSPPPPRQPPLEDGTGNTSPSGSTESVSGDGGASSINPTSGDRKYECQYCCREFANSQALGGHQNAHKKERQQLKRAQLQASRNAAVSFVRNPIISAFAPPHHLLSSPGQVMMPTAPPSWVYMPPRAAPPPFHVSVSHGCAFPSQNNSNNGNSYSIITGARSASAGVLPCVSGVGNSSPTLSTMGSQIQSLAQFGKLDGPSLSRFSKGDVGPNFDEGFGLDLHLSLAPP* 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g2000 264 Gene3D Classic Zinc Finger 65 127 - -
Mtr5g2000 264 PANTHER ZINC FINGER PROTEIN GIS3 13 263 - -
Mtr5g2000 264 ProSiteProfiles Zinc finger C2H2 type domain profile. 80 107 IPR013087 -
Mtr5g2000 264 MobiDBLite consensus disorder prediction 23 75 - -
Mtr5g2000 264 PANTHER ZINC FINGER PROTEIN 5 13 263 IPR044299 GO:0010090
Mtr5g2000 264 ProSitePatterns Zinc finger C2H2 type domain signature. 82 102 IPR013087 -
Mtr5g2000 264 MobiDBLite consensus disorder prediction 47 75 - -
Mtr5g2000 264 SUPERFAMILY beta-beta-alpha zinc fingers 76 107 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g2000 Mtr-Chr5 24903943 24905390 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g2000 10 263 C2H2 Transcription Factor Family AT1G68360 44.697 4.75e-54 173