Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g1992 ATGTCTTCTTCCAACTTTGTGTTCTGTTTCCTTTTCTTATTCTCTAATCTTCCACTTCTTCTCTCTGCTGCACCTGAATGTGAAAAAGGAATCACTTTGTGTGGATATCTTGGAGAAATCTCCTCCCCTTTCACCACCGTTAATGACTCAGAATGTGGCTATTACATATCTGGTTGTGACAACAGCAGTTTAGTGAAAACAATTCAACTCAGAGACCAAACCTATATAATTGATAGCATGTATTATATGAACAATTCAATTATCATCTATAGCCCAAACTCTCATAAATTAAATTTAGAATCATTTAAGAATAGGCCAATATTCAGCATTAACACTATTAACTTCCACCGATGCAATCATCACCGTGAGCACATGTTCAAATATAGAAACTGTTCCGATTACGATATCTACTTCACTTCTATACCTGATTATCCCATGTTCCCTATTTTTCCATTTCCATGTTTACCAAACTTTGTCCCTCACGATTGTGCAGAAATATTATTTTCAATACTCGAAATTAAAGTAGATTTAGAGTTTTCCAAAAATGAAGTAGATTTGAAGTTTTGTGAAGAGTGCCATAGTAAAGGAGACTTATGTCTTCCAGATCAGAAAACTTTGAAGTGGAATTGTGTCCCTGATTTAAGCTATGTAGCACCAACACCTCAGCCTCAGATTGAATACCATTCCGATATTCATACAAAGAGAAAGGAACAGCATTTGATGCTTGCGGTAATAGGTTTATCTATTGGATTGGCAACTATGATTGTTTTTATTGGTCTGTACTGTTGGAGAATCAAATCTTTTGGTGTCAAAAACATATCAAGAACCAATTATCAAGGTATCTCAAGAAATACAACATTCCCAGAAGGTGGAGCTGTCTACTTTGGAATTCCTGTCTTCTCTTACGAAGAGCTCAAAGAGGCAACGAACGATTTTGATAAAGCTCGAGAGCTTGGAGAAGGAGGCTTTGGGACTATTTACTATGGAAAGCTTGTAGATGGACGTGAAGTTGCAGTGAAGCGCCTATTCGAGCGCAACTACAGACCAGTAGAATCATTCACAAATGAAATTCAGATTCTCACACGCATGCGCCACAGGAATCTTGTATCCCTTTATGGCTGCACTTCACGCCATAGCCGTGAGTTGCTGTTAGTCTACGAATACATCCCAAACGGAACAGTTAGTAGCCATCTCCACGACAACAAAGCTGACCAAAGCTCATCATTACCATGGTCAGTGAGAATGAAAATAGCCATAGAAACCGCCAGTGCATTAACTTATCTTCATGCCTCTGATGTCATTCACCGAGACGTGAAAACCACCAACATTCTCCTTGACAACAATTTCTGTGTTAAGGTTGCTGATTTTGGTCTTTCAAGACTATACCCTAATGATGTCACACACGTCTCCACAGCGCCGAGAGGAACACCAGGCTATGTTGATCCAGAATATCGTTTATGCTACCAGCTAACAAACAAGAGCGATGTATATAGCTTCGGCGTTGTTCTTGTTGAGCTAATATCATCTTTGCCAGCAGTTGATTTGACAAGGGATAGAGATGACATTAAGTTGGCAAATCTAGCCATAAGGAAGATTCGAAGAAGCGAATTTTGTGACTTGATTGATCCTTCTCTTGGTTTTCAGACAGATAAGAGATTAAAAAATGTGATAACTTCTGTTGCGGAATTGGCTTTTCGGTGTTTGCAAGAGGAGAAGGAATTGAGACCCACTATGTCTGAAGTGTTGGAGGTGCTGCAGACAATTGAAAGCAGGAAGGATGAGGCAGGGAATCACGAGGGGATTGATTTTCATCCTGAAGTAGGAGTAGCACAAAGTTATGTACATCCATCAGTTCCTAACACTTGGATGACGCCACGACGCCATCGACAAACACTTTGA 1899 0.3965 MSSSNFVFCFLFLFSNLPLLLSAAPECEKGITLCGYLGEISSPFTTVNDSECGYYISGCDNSSLVKTIQLRDQTYIIDSMYYMNNSIIIYSPNSHKLNLESFKNRPIFSINTINFHRCNHHREHMFKYRNCSDYDIYFTSIPDYPMFPIFPFPCLPNFVPHDCAEILFSILEIKVDLEFSKNEVDLKFCEECHSKGDLCLPDQKTLKWNCVPDLSYVAPTPQPQIEYHSDIHTKRKEQHLMLAVIGLSIGLATMIVFIGLYCWRIKSFGVKNISRTNYQGISRNTTFPEGGAVYFGIPVFSYEELKEATNDFDKARELGEGGFGTIYYGKLVDGREVAVKRLFERNYRPVESFTNEIQILTRMRHRNLVSLYGCTSRHSRELLLVYEYIPNGTVSSHLHDNKADQSSSLPWSVRMKIAIETASALTYLHASDVIHRDVKTTNILLDNNFCVKVADFGLSRLYPNDVTHVSTAPRGTPGYVDPEYRLCYQLTNKSDVYSFGVVLVELISSLPAVDLTRDRDDIKLANLAIRKIRRSEFCDLIDPSLGFQTDKRLKNVITSVAELAFRCLQEEKELRPTMSEVLEVLQTIESRKDEAGNHEGIDFHPEVGVAQSYVHPSVPNTWMTPRRHRQTL* 633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g1992 632 PANTHER WALL-ASSOCIATED KINASE-LIKE PROTEIN 13 625 - -
Mtr5g1992 632 SUPERFAMILY Protein kinase-like (PK-like) 293 589 IPR011009 -
Mtr5g1992 632 Gene3D Phosphorylase Kinase; domain 1 292 388 - -
Mtr5g1992 632 Gene3D Transferase(Phosphotransferase) domain 1 389 606 - -
Mtr5g1992 632 ProSitePatterns Protein kinases ATP-binding region signature. 318 340 IPR017441 GO:0005524
Mtr5g1992 632 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 13 625 IPR044652 -
Mtr5g1992 632 SMART serkin_6 312 588 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr5g1992 632 ProSiteProfiles Protein kinase domain profile. 312 588 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr5g1992 632 Pfam Protein tyrosine and serine/threonine kinase 315 585 IPR001245 GO:0004672|GO:0006468
Mtr5g1992 632 ProSitePatterns Serine/Threonine protein kinases active-site signature. 433 445 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g1992 Mtr-Chr5 24822691 24826137 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g1992 44 622 Receptor kinase-like Gene Family AT1G25390 43.792 8.76e-145 432
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Mtr5g1992 PK_Tyr_Ser-Thr 1.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g1992 - - var:108334729 602.438