Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g1970 ATGACGATTTCTTCGATGAATGATCTAATTTACGTGCGGACGAGGGCAGTTTCGAACATTGTCATTAATCGAATATATGCGGCTGATGAGAACCCTTCTGGTGAGCAGGATGGACCTCAGGCTAAATTGGGGCATGTCCTTCAGAGACATGCATTCTTTTCTATGGAGGCCATTGATGATGTTGATGACGACGTTGTTGAAATTTCTGCAAGGGATTTTGCCGAGGCTAAAAAAAATTCTAGAAGAAATCGCCTGAGGACCATAGATGATCTTATTGATGTGCATTTAGACGAAGAGCAGCCTTCAAAAAAAATTGTCTTAAGCTGTCCTATATGCATGGGCCCTTTCGTCGAAGAAATGACGACAAGGTGTGGTCATATTTTTTGCAAGATTTGTATCAAGATTGCTATCAATGCTCAGGCTAAATGTCCTATCTGCAGAAAAAAGACGAATGTGAAACAACTTATAAGAGTGTTTCTCCCAACAACTGATTGA 495 0.4061 MTISSMNDLIYVRTRAVSNIVINRIYAADENPSGEQDGPQAKLGHVLQRHAFFSMEAIDDVDDDVVEISARDFAEAKKNSRRNRLRTIDDLIDVHLDEEQPSKKIVLSCPICMGPFVEEMTTRCGHIFCKICIKIAINAQAKCPICRKKTNVKQLIRVFLPTTD* 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g1970 164 ProSitePatterns Zinc finger RING-type signature. 124 133 IPR017907 -
Mtr5g1970 164 PANTHER ELFLESS, ISOFORM B 100 164 - -
Mtr5g1970 164 PANTHER ELFLESS, ISOFORM B 4 98 - -
Mtr5g1970 164 SUPERFAMILY RING/U-box 89 153 - -
Mtr5g1970 164 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 63 163 IPR013083 -
Mtr5g1970 164 ProSiteProfiles Zinc finger RING-type profile. 109 147 IPR001841 -
Mtr5g1970 164 SMART ring_2 109 146 IPR001841 -
Mtr5g1970 164 PANTHER RING ZINC FINGER-RELATED 4 98 - -
Mtr5g1970 164 PANTHER RING ZINC FINGER-RELATED 100 164 - -
Mtr5g1970 164 Pfam Zinc finger, C3HC4 type (RING finger) 109 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g1970 Mtr-Chr5 24532501 24533465 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g1970 57 163 C3H Transcription Factor Family AT3G07200 47.368 1.27e-30 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g1970 K22651 - gmx:100792853 124.405