Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g1967 ATGTCCGATGCCACAAATTACAGGTGGATGGAGGTTGTTTCGGACATCGGCCTTAATCGGGTACCTGTGGTTGATGAGAATTCAATTTTTGGGAATACTTCTCGTGAGCAAGATGAACCTTCGACTCAGATGAGGCATGACCAAACACTCGCACTATTGCCTATGGAGGCCACCGATGATGACGTTATTGAAATTTCCGCAAAGGCTTTTGCCAAGGCAATACCAAATTTCAGAAGAAATCGACGGAGGACCATTGATGATGTTATTGATGTGTATATAGAGGAAGAAGAAGAGCAGCATCCAAAGAAACCTCTCATCAGTTGTCCTATATGCATGGGCCCTTTTGTCGAAGAAATGACCACAAAGTGTGGCCACATTTTTTGCAAGACTTGTATCAAGGATGCAATCAAGGCTCAAGCTAAATGTCCTACCTGTAGAAAAAAGATCACTTCTGTTAGACAGCTTATAAGGGTGTATCTCCCAACAACTGGTTGA 495 0.4303 MSDATNYRWMEVVSDIGLNRVPVVDENSIFGNTSREQDEPSTQMRHDQTLALLPMEATDDDVIEISAKAFAKAIPNFRRNRRRTIDDVIDVYIEEEEEQHPKKPLISCPICMGPFVEEMTTKCGHIFCKTCIKDAIKAQAKCPTCRKKITSVRQLIRVYLPTTG* 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g1967 164 ProSitePatterns Zinc finger RING-type signature. 123 132 IPR017907 -
Mtr5g1967 164 ProSiteProfiles Zinc finger RING-type profile. 108 146 IPR001841 -
Mtr5g1967 164 SUPERFAMILY RING/U-box 85 153 - -
Mtr5g1967 164 Pfam Zinc finger, C3HC4 type (RING finger) 108 145 - -
Mtr5g1967 164 SMART ring_2 108 145 IPR001841 -
Mtr5g1967 164 PANTHER ELFLESS, ISOFORM B 98 163 - -
Mtr5g1967 164 PANTHER ELFLESS, ISOFORM B 6 96 - -
Mtr5g1967 164 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 68 163 IPR013083 -
Mtr5g1967 164 PANTHER RING ZINC FINGER-RELATED 6 96 - -
Mtr5g1967 164 PANTHER RING ZINC FINGER-RELATED 98 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g1967 Mtr-Chr5 24515260 24515754 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g1967 59 163 C3H Transcription Factor Family AT3G07200 47.328 5.83e-31 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g1967 K22651 - gmx:100306616 128.642