Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g1965 ATGGTTTCAATGCAATTCCACCACAAAATGCACTCTCATAAAATGGAATTTCGTGACTATATCCTAGCATTGGAAGAAGAAAAGAAGAAAATTCAGGTTTTCCCTAGAGACCTTCCTCTTTCTCTTGAGCTTGTTACACAAGCCATTGAAACTTGTAAGCAACAGTTGTTTGGAACACAATCGGAGTGTTCGGAACAGACATCGACAGATGAAGGTCTTGTTTTTGAGGAGTTTATTCCTATCAAGAAAAGGGCATTGTCCCCCGATTGCGATGAAAATGATGAGGAAGATGACGACGATGAGGAGCAACATTCATCACATAAGATGAAATCTGATTGGCTAAGATCTGTTCAGTTGTGGAATCCCAACCCTTCATCTGCTAAAGAGGATGTACCTAGGAAAACAAATGTCGTAGAAGTGAAGAGAAATGGTGGAGCATTTCAACCATTCCACAAAGAGGAAATCGCTGCTGAAAAAGATAATGCATTAGAAAGTGATAAAGCACCAACCAGTTCGCCTCAAGTACCAGCTACAAGTTCTACCGAACCAGTTCCTGAAAGCGGCAGCAAAAAAGACGATAAAGGTCAGAGAAAGCAGCGCCGTTGCTGGTCACAGGAATTGCACAAACGCTTCTTGCATGCCCTTCAACAACTTGGCGGTTCAAATTCTGCGACGCCAAAACAGATCAGGGAACTAATGAAAGTCGATGGCCTCACCAACGATGAAGTCAAAAGTCATTTACAGAAATTTCGTCTGCACACAAGAAGAAGCCCAATAATTCACAACAATTCTAATTCACATACAGCTCCTATGTTCTTGGTAGGGAACATTTATGTCCAACCACAAGAATATGCTGCAGTAGCCACCAAAACAACAGTGTCAGGAGAATTAACCACAGTTACTACTCCAACAGGAATTTATGCACCTGTGGCTACACATCCTTCATCTACAACCACAGTTATAAAACCAAAGTCTAAGAAATTTGAGTTGAGTGAGAATTCACATTCTGTAGAAAGAGTTGTTGCTCATTCTAACTCCCCTGCCTCATCATGTTCCACTCATACACCTACAACTTCAAGATGCTGA 1086 0.4144 MVSMQFHHKMHSHKMEFRDYILALEEEKKKIQVFPRDLPLSLELVTQAIETCKQQLFGTQSECSEQTSTDEGLVFEEFIPIKKRALSPDCDENDEEDDDDEEQHSSHKMKSDWLRSVQLWNPNPSSAKEDVPRKTNVVEVKRNGGAFQPFHKEEIAAEKDNALESDKAPTSSPQVPATSSTEPVPESGSKKDDKGQRKQRRCWSQELHKRFLHALQQLGGSNSATPKQIRELMKVDGLTNDEVKSHLQKFRLHTRRSPIIHNNSNSHTAPMFLVGNIYVQPQEYAAVATKTTVSGELTTVTTPTGIYAPVATHPSSTTTVIKPKSKKFELSENSHSVERVVAHSNSPASSCSTHTPTTSRC* 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g1965 361 MobiDBLite consensus disorder prediction 85 110 - -
Mtr5g1965 361 Gene3D - 197 255 - -
Mtr5g1965 361 MobiDBLite consensus disorder prediction 186 201 - -
Mtr5g1965 361 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 7 358 IPR044787 GO:0003700|GO:0006355
Mtr5g1965 361 SUPERFAMILY Homeodomain-like 196 256 IPR009057 -
Mtr5g1965 361 MobiDBLite consensus disorder prediction 163 201 - -
Mtr5g1965 361 MobiDBLite consensus disorder prediction 166 185 - -
Mtr5g1965 361 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 7 358 - -
Mtr5g1965 361 MobiDBLite consensus disorder prediction 340 361 - -
Mtr5g1965 361 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 198 253 IPR006447 GO:0003677
Mtr5g1965 361 Pfam Myb-like DNA-binding domain 200 249 IPR001005 -
Mtr5g1965 361 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 195 255 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g1965 Mtr-Chr5 24435736 24438300 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g1965 1 312 G2-like Transcription Factor Family AT1G68670 47.262 1.79e-78 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Mtr5g1965 Myb_DNA-binding 5.6e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g1965 - - gmx:100819750 429.869