Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g1964 ATGCAAGCTCACACATTCTCCTACATATCCTCAATTCAAACTAATAATGACACTGTTGATGAGTCTTCCATTTCACTCTCACTTGGCCCTCCTGGTACACACCACAAACCTAAACTTCATCATCAACATCATCATCATCATAATCACCTCCAAAACCAAAACTTTACCATTGATGATGAGCAAAGTGGTGTAACAGTTGCACTTCACATTGGTCTTCCATCAAACATTTCACAAAACATAACACCTATTAGTAAACCTGATCATCATTTGGCTTCAGCTCCAATTCAAGGTCAATATTGGATTCCTTCACCTGCTCAAATCCTCATTGGACCAACACAGTTCTCTTGCACAGTGTGCAATAAAATGTTCAACCGTTTCAATAATATGCAGATGCATATGTGGGGACATGGATCACAATACAGAAAAGGACCAGAATCTCTAAGAGGAGTAAAACCAGCTTCATCAATGTTAAGACTTCCTTGCTATTGCTGTGCAGAGGGATGCAAGAACAACATAGAGCATCCAAGGTCAAGGCCACTCAAGGATTTCAGAACACTTCAAACACACTACAAGAGGAAGCATGGAGCAAAGCCATTTGGGTGTAGAAAGTGTGGGAAACCATTTGCAGTTAGAGGTGACTGGAGAACACATGAGAAAAACTGTGGAAAGCTTTGGTTTTGTATCTGTGGATCTGATTTCAAACACAAGAGATCTCTTAAAGATCATGTTCGTGCTTTCGGTGATGGTCATGCTCCACACACCGTCGAGAGTTGTGAAGATCAAGAAGTGTTGTTAGGTGATGAATATGATGAGGAATTTGAAGGAGATGAAAATTATGAAGATGATGATGATAATGATAACATTGATCGAATGGTTTTTGGTTTTTAA 888 0.3953 MQAHTFSYISSIQTNNDTVDESSISLSLGPPGTHHKPKLHHQHHHHHNHLQNQNFTIDDEQSGVTVALHIGLPSNISQNITPISKPDHHLASAPIQGQYWIPSPAQILIGPTQFSCTVCNKMFNRFNNMQMHMWGHGSQYRKGPESLRGVKPASSMLRLPCYCCAEGCKNNIEHPRSRPLKDFRTLQTHYKRKHGAKPFGCRKCGKPFAVRGDWRTHEKNCGKLWFCICGSDFKHKRSLKDHVRAFGDGHAPHTVESCEDQEVLLGDEYDEEFEGDENYEDDDDNDNIDRMVFGF* 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g1964 295 PANTHER ZINC FINGER PROTEIN WIP6 4 286 - -
Mtr5g1964 295 Gene3D Classic Zinc Finger 195 249 - -
Mtr5g1964 295 SUPERFAMILY beta-beta-alpha zinc fingers 98 135 IPR036236 -
Mtr5g1964 295 MobiDBLite consensus disorder prediction 20 47 - -
Mtr5g1964 295 SUPERFAMILY beta-beta-alpha zinc fingers 182 219 IPR036236 -
Mtr5g1964 295 ProSiteProfiles Zinc finger C2H2 type domain profile. 114 141 IPR013087 -
Mtr5g1964 295 ProSitePatterns Zinc finger C2H2 type domain signature. 116 136 IPR013087 -
Mtr5g1964 295 PANTHER ZINC FINGER PROTEIN WIP2 4 286 IPR043584 GO:0003700|GO:0010468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g1964 Mtr-Chr5 24336724 24338282 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g1964 20 266 C2H2 Transcription Factor Family AT1G13290 70.079 7.16e-120 344
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mtr5g1964 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g1964 - - aprc:113870355 436.802