Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g1957 ATGTACAAGTTCTCTCTATATATATTCCTTCCTCAAACAACTCCTATTCCCACTCACATATACACATATCTCTCTTATTTTGACTCATACAACAAACACAAACTATTTCATTTTCTACCAAAAATGGATGGAGGTAGTTGCATAGACGAAAGCACTACAACTGAATCATTTTCAATAACAATATCGCCAACAAAGAAACCGTCAACGCCGCCACCTCCCAACAGCCTATGCCGCGTTGGCAGCGGCGCAAGCGCTGTTGTGGACTCTGATGGCAGCGGCGTTGGCGAAGCTGAGTCACGGAAGCTTCCTTCTTCGAAGTACAAAGGTGTTGTACCACAACCAAATGGTCGTTGGGGAGCACAGATTTACGAAAAGCACCAGCGTGTGTGGCTTGGAACATTTAACCAAGAAGACGAAGCTGCTAAAGCTTATGATGTTGCCGCACAACGTTTCCGCGGCAAAGATGCTGTAACAAACTTTAAACCACTCTCTGACCACAACAACGATGACATGGAACTCGAGTTTCTCAACTCGCATTCCAAGTCAGAGATTGTGGACATGTTAAGAAAACATACATACAATGACGAACTGGAACAGAGCAAGCGCAGTCATGGCTTCGTCAGCAGACGAAGCCATGGCTGTTCTGACTCTGTTAACTTTGCCAGCTCGGCATACAATACCGATAAAAAGGCACGTGAAGCTCTGTTCGAAAAGGTTGTTACCCCGAGCGACGTTGGGAAGTTAAATCGGTTAGTTATACCGAAACAGCATGCTGAGAAGCACTTTCCATTACAGAAAGCCGATTGCGTCCAGGGAAGCGCATCGGCAGCTGGTAAGGGAGTGCTTTTGAATTTTGAAGACATTGGAGGGAAAGTGTGGAGATTTAGATACTCTTATTGGAACAGTAGTCAAAGTTACGTTCTAACAAAAGGATGGAGCCGGTTCGTTAAGGAGAAGAATCTGAAAGCCGGTGATACGGTTTGTTTTCAACGGTCTACTGGACCGGAGAAGCAGCTGTTTATTGATTGGAAAGCAAGGAAGAATGTTAATGAGGTTGGGTTGTTTGTTCCGGTTGGACCGGTTGTTGAGCCGGTTCAGATGGTTCGGTTATTTGGGGTTAATATTTTGAAACAACTCCCTGGATCCGATGTTAATAGTAATGGTAATGTTATTGCTGGGTTCTGCAATGGAAAGAGGAAGGAGTTGAATATGTTTACTTTTGACTCTTGCAAGAAGCCTAAGATTATTGGAGCTTTGTAA 1260 0.4421 MYKFSLYIFLPQTTPIPTHIYTYLSYFDSYNKHKLFHFLPKMDGGSCIDESTTTESFSITISPTKKPSTPPPPNSLCRVGSGASAVVDSDGSGVGEAESRKLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNQEDEAAKAYDVAAQRFRGKDAVTNFKPLSDHNNDDMELEFLNSHSKSEIVDMLRKHTYNDELEQSKRSHGFVSRRSHGCSDSVNFASSAYNTDKKAREALFEKVVTPSDVGKLNRLVIPKQHAEKHFPLQKADCVQGSASAAGKGVLLNFEDIGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDTVCFQRSTGPEKQLFIDWKARKNVNEVGLFVPVGPVVEPVQMVRLFGVNILKQLPGSDVNSNGNVIAGFCNGKRKELNMFTFDSCKKPKIIGAL* 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g1957 419 CDD AP2 105 160 IPR001471 GO:0003700|GO:0006355
Mtr5g1957 419 SUPERFAMILY DNA-binding pseudobarrel domain 235 344 IPR015300 -
Mtr5g1957 419 CDD B3_DNA 235 332 IPR003340 GO:0003677
Mtr5g1957 419 SUPERFAMILY DNA-binding domain 105 161 IPR016177 GO:0003677
Mtr5g1957 419 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 42 419 IPR044800 GO:0003700
Mtr5g1957 419 SMART B3_2 236 347 IPR003340 GO:0003677
Mtr5g1957 419 Pfam B3 DNA binding domain 236 343 IPR003340 GO:0003677
Mtr5g1957 419 Pfam AP2 domain 105 153 IPR001471 GO:0003700|GO:0006355
Mtr5g1957 419 ProSiteProfiles B3 DNA-binding domain profile. 236 346 IPR003340 GO:0003677
Mtr5g1957 419 Gene3D - 223 353 IPR015300 -
Mtr5g1957 419 ProSiteProfiles AP2/ERF domain profile. 106 161 IPR001471 GO:0003700|GO:0006355
Mtr5g1957 419 Gene3D AP2/ERF domain 105 162 IPR036955 GO:0003700|GO:0006355
Mtr5g1957 419 PANTHER AP2/ERF AND B3 DOMAIN TRANSCRIPTION FACTOR 42 419 - -
Mtr5g1957 419 SMART rav1_2 106 167 IPR001471 GO:0003700|GO:0006355
Mtr5g1957 419 MobiDBLite consensus disorder prediction 80 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g1957 Mtr-Chr5 24228566 24230183 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g1957 46 419 B3 DNA Binding Superfamily AT1G25560 58.140 2.05e-139 401
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-RAV Mtr5g1957 B3 1e-28 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g1957 K09287 - gmx:100776987 547.354