Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g1950 ATGGCGGGACCATCATGGCTGGTGGACAAAAGTAGAATTGCAACCAAAATAAAAAGTGCATCGGGAGCATGTGATCCGGAAAATGTTACATGGAAAAGCAATCCTACAAAGGCTTGCCCAAATTGTCAGCATACTATTGACAATAGTGATGTTGTAAAAGAGTGGCCTGGCTTGCCAAAAGGTGTCAAATTTGATCCATCTGATCAGGAGGTAATTTGGCACTTGCTTGCAAAATGTGGTGTTGGAAATTCAAAACCTCATCCTTTCGTTGATGAGTTTATTATTACTCTTGAAGTGAATGATGGAATTTGTTACACTCATCCTCAAAACTTGCCAGGTGTTAAGCAAGATGGAAATGCATCCCACTTCTTCCACAGAGCAATTAAGGCTTATAATACTGGCACTCGAAAACGCCGAAAAATACATGATCAGGATTTTGGTGACGTCCGCTGGCACAAAACTGGAAGAACTAAGCCAGTAATCTTGAATGGGGTTCAAAAAGGCTGTAAAAAGATTATGGTTCTGTATATGAGTAGTGCAGGAGGAGGAAAAGCTGAGAAAACTAATTGGGTTATGCATCAATATCATCTAGGAACAGAAGAGGATGAAAAGGATGGTGAGTTTGTTATCTCCAAAGTGTTTTACCAACAGCAGCAAGTCAAACTGGGTGATAAGGATGAACAAGATATTCCTGAAGCTATTGAAGCAACAATCGCAAAAGTGGATCCGGTTACTCCCAAATCTGTGACTCCTGAGCCTCCTTATACTGAAAGGCTGTATTCAGATGTAGATCTAGGACAAGACACACCCGCCATTCCTCAGCCTCCTCAGATGAATTGTCTGGATGAAATTCAACCTTATTGTGAAGAGCAAGCAAAAGATGATCTATCCATGGTAGAAACTGAACGTAATGAAGGGAAAGATAATAATGAAAATAATGCTGATGATGGTCAAAAATGGTGCGAAGGGACAGATAATAATGAAAATAATGCTGATGAGGGCCAAAAATGGTGGGATAGTGAATCACAAAATCTGTTGGATTCACAACAATTGGTTGACGCATTGTCCTTGTGTGATGATTTACTTCGTAGCCAGTCTCCCACTAGAGACGGTAAAGATGAAGAACAAAAGAACCAACCCAGCCTTTCTATTTATGCTCAGCTAGGACCCGAGCATCTGAAGAAGGATATCGAAGACTGTCAAAATCTCGTCCTTGAGCCTTCAAATGTAGAGTCAAATGTAGAGAATGACACACCTTCGGAGTTTCGACTAAGTCAATTGGAATTTGGCTCACAAGATAGCTTTATAGCATTTGGTTACAACAAGGTAGTAAAGTAA 1338 0.4043 MAGPSWLVDKSRIATKIKSASGACDPENVTWKSNPTKACPNCQHTIDNSDVVKEWPGLPKGVKFDPSDQEVIWHLLAKCGVGNSKPHPFVDEFIITLEVNDGICYTHPQNLPGVKQDGNASHFFHRAIKAYNTGTRKRRKIHDQDFGDVRWHKTGRTKPVILNGVQKGCKKIMVLYMSSAGGGKAEKTNWVMHQYHLGTEEDEKDGEFVISKVFYQQQQVKLGDKDEQDIPEAIEATIAKVDPVTPKSVTPEPPYTERLYSDVDLGQDTPAIPQPPQMNCLDEIQPYCEEQAKDDLSMVETERNEGKDNNENNADDGQKWCEGTDNNENNADEGQKWWDSESQNLLDSQQLVDALSLCDDLLRSQSPTRDGKDEEQKNQPSLSIYAQLGPEHLKKDIEDCQNLVLEPSNVESNVENDTPSEFRLSQLEFGSQDSFIAFGYNKVVK* 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g1950 445 MobiDBLite consensus disorder prediction 296 315 - -
Mtr5g1950 445 MobiDBLite consensus disorder prediction 316 334 - -
Mtr5g1950 445 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 2 439 IPR044799 GO:0003700
Mtr5g1950 445 Pfam No apical meristem (NAM) protein 59 197 IPR003441 GO:0003677|GO:0006355
Mtr5g1950 445 ProSiteProfiles NAC domain profile. 58 216 IPR003441 GO:0003677|GO:0006355
Mtr5g1950 445 MobiDBLite consensus disorder prediction 296 334 - -
Mtr5g1950 445 Gene3D NAC domain 67 221 IPR036093 GO:0003677|GO:0006355
Mtr5g1950 445 PANTHER SUPPRESSOR OF GAMMA RESPONSE 1 2 439 - -
Mtr5g1950 445 SUPERFAMILY NAC domain 43 216 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g1950 Mtr-Chr5 24052002 24056767 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g1950 5 223 NAC Transcription Factor Family AT4G28500 51.556 1.01e-72 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Mtr5g1950 NAM 2.9e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g1950 - - gmx:100803236 700.664