Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g1949 ATGTCGAGCGGAAAGAAAACTCGAGGTCGGCAAAAGATTGAGATGAAAAAGATGAGCAATGAAAGCAGCCTACAAGTGACTTTCTCGAAGCGCCGTAGTGGGCTCTTCAAGAAAGCTAGCGAGCTTTGCAGTCTTTGTGGTGCATATGTTGCTCTAATAATCTTCTCACCAAGTGAAAAGGTATTTTCATTTGGTCACCCAAATGTTGAAACGGTCATAGATCATTATCTCTCTCAGGTCCTACCCCAAAATGATGACATCATGAAAATCATTGGGGATGACCGGAACACCGTTGTGTCCGAGCTCAATGCTGTATTGACTCGTATCAAAGATGAACTAGACATCGAAAAGAATCGTGGGAATGAACTGAGCCAGCCGCAAAAGAAGAATCTAGCTCAGTTTTGGTGGAATTGTCCTATTGATGGGATGGATATGGTCCAACTTGAATCATTCAAGAAGGCTCTGGAAGATCTTAAGAAACTTGTTGCACAACATGCTGATAGGGTTGAAATGCAAGGTACTTCTACCCAACCCCTTCAAGTTTTTGAAGGAAATGGATCATCATCTAACATGCCTCTTAAGCACCAGCCAGATCCTCAACAAGATTCAATCTTTCCGGCAGAATTTATTCAGAACCCTATGTTGCAACCACATTTGTTTGGCTTCAACAATATGGGAGGAGAAGGTGGACATGGTCCCCATGGGCTTTCTTGA 714 0.43 MSSGKKTRGRQKIEMKKMSNESSLQVTFSKRRSGLFKKASELCSLCGAYVALIIFSPSEKVFSFGHPNVETVIDHYLSQVLPQNDDIMKIIGDDRNTVVSELNAVLTRIKDELDIEKNRGNELSQPQKKNLAQFWWNCPIDGMDMVQLESFKKALEDLKKLVAQHADRVEMQGTSTQPLQVFEGNGSSSNMPLKHQPDPQQDSIFPAEFIQNPMLQPHLFGFNNMGGEGGHGPHGLS* 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g1949 237 Coils Coil 148 168 - -
Mtr5g1949 237 Gene3D - 20 87 IPR036879 GO:0003677|GO:0046983
Mtr5g1949 237 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Mtr5g1949 237 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Mtr5g1949 237 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Mtr5g1949 237 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL23-RELATED 8 173 - -
Mtr5g1949 237 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 64 IPR002100 GO:0003677|GO:0046983
Mtr5g1949 237 Gene3D - 88 182 - -
Mtr5g1949 237 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
Mtr5g1949 237 CDD MADS_MEF2_like 9 77 IPR033896 GO:0000977|GO:0045944
Mtr5g1949 237 PANTHER MADS BOX PROTEIN 8 173 - -
Mtr5g1949 237 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
Mtr5g1949 237 SUPERFAMILY SRF-like 9 81 IPR036879 GO:0003677|GO:0046983
Mtr5g1949 237 Coils Coil 99 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g1949 Mtr-Chr5 24041008 24041721 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g1949 5 168 Type I MADS-box Gene Family AT5G60440 52.695 3.83e-54 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mtr5g1949 SRF-TF 1.1e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g1949 - - mtr:MTR_1g105905 241.891