Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g1897 ATGAGTTATTGCAAAAGAGTGGGCATGACCAGAAACAATAAGTCCAACATTGTAAAAGGACAATGGACACTAGAAGAAGATAGGTTGTTGATAAATTTGGTTGAACAATATGGATTGAGAAAATGGACTGATATTGCTCAGAAATTGCCTGGTAGAATGGGAAAACAGTGTAGAGAGCGATGGATTAATCATCTAAGGCCAGATATTAAGAAGGACATATGGAGTGAGGAAGAAGAAAAAATATTGATGAAAGCTCATGAAGAATTGGGAAACAAATGGGTAAAGATTGCCAAAAGGTTACCTGGGAGAACTGAAAACTCAATTAAAAACCATTGGTATGCAACAAAGAGAAGAGAATATTCAAAAAGAAATTACCCTAGTGGAAGTACTCTTCTACAAGAATATATCAAGAGCTTGAACTTAGACAAAAATCCCCCAAAAGAGTATACAAGAAAATCTTCAACTAAAGCCAGTGACAGTGAGTATTTGCTAACCAACCAAAGCACAATATCAGCTCAGTCTCAGAAAGCCAATGACAGTCAGTGTTTGCTATCAAGCGGTGATTTTGAAGACGATATCCTAGATATTTGTTTCGATGATAATTTGTTTCAAGATGGGTGTAGTATTGATTCTCTGCTAGATGATATGCAAATTGTTGAAGATACTATGCTTGGAGTTGATGTTAAGAAAGAGCTGGATTTGATCGAGTTTTTTTACTCAGGTCAATGA 729 0.358 MSYCKRVGMTRNNKSNIVKGQWTLEEDRLLINLVEQYGLRKWTDIAQKLPGRMGKQCRERWINHLRPDIKKDIWSEEEEKILMKAHEELGNKWVKIAKRLPGRTENSIKNHWYATKRREYSKRNYPSGSTLLQEYIKSLNLDKNPPKEYTRKSSTKASDSEYLLTNQSTISAQSQKANDSQCLLSSGDFEDDILDICFDDNLFQDGCSIDSLLDDMQIVEDTMLGVDVKKELDLIEFFYSGQ* 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g1897 242 PANTHER TRANSCRIPTION FACTOR MYB98 11 167 - -
Mtr5g1897 242 ProSiteProfiles Myb-like domain profile. 66 112 IPR001005 -
Mtr5g1897 242 SUPERFAMILY Homeodomain-like 16 112 IPR009057 -
Mtr5g1897 242 SMART sant 70 118 IPR001005 -
Mtr5g1897 242 SMART sant 18 67 IPR001005 -
Mtr5g1897 242 CDD SANT 74 116 IPR001005 -
Mtr5g1897 242 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 14 69 IPR017930 -
Mtr5g1897 242 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 70 120 IPR017930 -
Mtr5g1897 242 Gene3D - 18 71 - -
Mtr5g1897 242 PANTHER MYB PROTEIN-RELATED 11 167 - -
Mtr5g1897 242 Gene3D - 73 134 - -
Mtr5g1897 242 ProSiteProfiles Myb-like domain profile. 14 65 IPR001005 -
Mtr5g1897 242 CDD SANT 22 65 IPR001005 -
Mtr5g1897 242 Pfam Myb-like DNA-binding domain 74 113 IPR001005 -
Mtr5g1897 242 Pfam Myb-like DNA-binding domain 19 65 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g1897 Mtr-Chr5 21969118 21971144 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g1897 14 216 MYB Transcription Factor Family AT4G18770 54.460 1.02e-70 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mtr5g1897 Myb_DNA-binding 5.2e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g1897 K09422 - gmx:100816653 280.411