Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g1893 ATGAATGAGCGGAGGGGTAAGCACCAACAAAGTCGTGGTAAACCTTACAGTGCTCCAGCTGATAAGGGTAAGCATAGGGTGAATGATAAGAGGAGGCCCAGAAAGAGAGATACTCCTACTGAAGTTGTGTGTTTCCGATGTGGAGAGAAAGGTCATAAGAGTAACGCTTGTGGTGGCGATGTAAAGCGGTATTTCCGTTGTGGCAGAAAAGGACATACAATTGCAGATTGCAAGCATGATGATATAGTTTGCTTTAAATGTGGTGAAGAAGGACATATTAGCCCTCAGTGTAAGAAACCTAATAAAGCTCAGTCTAGTTGCAAGGTGTTTGCTTTAGCTGATACTGGTGCTACATATTGTTTTATTGCTGCTGATTGTGTTTCGAAATTGGGTCTTGTTATGTCATCTATTAATGGGGAAATGGTTGTCGAAACCCCGGCTAAGGCTTCGGTGACTAGTTCTCTAGTATGCTTGAAGTGTCCTTTGTTGATGTTTGGTAGAGATTTTGCAGTGGACTTAGTCTGTTTGCCGTTGACTGGGATGGATGTAATACTAGAGAGGGAAGTAGAATTTTCTATTGAACTTATTCCGGGTACGAAACCTGTTTCTATGGCACCTTACCGTATGTCAGCTTCCGAATTAGCTGGGTTGAAAAAGCAGTTAGAAGATTTGCTTGATAAAAAGTTTGTAAGACCGAGTGTATCGCCTTGGGGAGTGTCGGTGTTATTGGTTAAGAAGAAAGATGGTAGCATGAGGTTATGTATAGATTACCGGAAGTTGAATAAAGTGACAATAAAGAATAGATATCCACCTCCGAGGATCGACGATTTGATGGATCAGTTGATGGGTGCGCGTGTGTTCAGTAAAATTGACTTAAGATGGGGCTATCACCATATCAAAGTGAAAGATGAGGATATTCAGAAGACGGCCTTTAGGACACATTACGGACATAACGAATATTCTGTGATGCCTTTCGGTGTTATTAATGCGCCAGGAGTATTTATGGAATATATGAATTGTATTTTTCATACTTATCTAGATCGTTTTGTTGTTGTGTTTATAGATGATATTCTGAAATACTCTAAGTCTGAGGAGGAACATGCCGAGCATTTGAGAATTGTTTTGCAAGTGCTGAAGAAGAATTTATATGCCAAGTTATCGAAGTGCGAATTCTGGTTGAACGAAGTGAGTTTTCTTGGTCATATTATTTCTGGTAGTGGTATTGTTGTAGACCCATCTAAGGTTGATGCAGTATCGCAATGGAGACTCCGAAGTCGGTTACCGAGGTTAGGAGCTTTTTGGGTTTGGCAGGTTATTATCGAAGATTTATTGAAGGATTTTCCAAGTTAG 1350 0.4044 MNERRGKHQQSRGKPYSAPADKGKHRVNDKRRPRKRDTPTEVVCFRCGEKGHKSNACGGDVKRYFRCGRKGHTIADCKHDDIVCFKCGEEGHISPQCKKPNKAQSSCKVFALADTGATYCFIAADCVSKLGLVMSSINGEMVVETPAKASVTSSLVCLKCPLLMFGRDFAVDLVCLPLTGMDVILEREVEFSIELIPGTKPVSMAPYRMSASELAGLKKQLEDLLDKKFVRPSVSPWGVSVLLVKKKDGSMRLCIDYRKLNKVTIKNRYPPPRIDDLMDQLMGARVFSKIDLRWGYHHIKVKDEDIQKTAFRTHYGHNEYSVMPFGVINAPGVFMEYMNCIFHTYLDRFVVVFIDDILKYSKSEEEHAEHLRIVLQVLKKNLYAKLSKCEFWLNEVSFLGHIISGSGIVVDPSKVDAVSQWRLRSRLPRLGAFWVWQVIIEDLLKDFPS* 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g1893 449 Pfam Retroviral aspartyl protease 110 186 - -
Mtr5g1893 449 MobiDBLite consensus disorder prediction 1 35 - -
Mtr5g1893 449 CDD retropepsin_like 108 185 - -
Mtr5g1893 449 Pfam Zinc knuckle 83 99 IPR001878 GO:0003676|GO:0008270
Mtr5g1893 449 Pfam Zinc knuckle 43 57 IPR001878 GO:0003676|GO:0008270
Mtr5g1893 449 Coils Coil 207 227 - -
Mtr5g1893 449 ProSiteProfiles Zinc finger CCHC-type profile. 84 99 IPR001878 GO:0003676|GO:0008270
Mtr5g1893 449 ProSiteProfiles Reverse transcriptase (RT) catalytic domain profile. 225 403 IPR000477 -
Mtr5g1893 449 PANTHER TRANSPOSON TY3-I GAG-POL POLYPROTEIN 201 420 - -
Mtr5g1893 449 Gene3D - 60 107 - -
Mtr5g1893 449 ProSiteProfiles Zinc finger CCHC-type profile. 44 57 IPR001878 GO:0003676|GO:0008270
Mtr5g1893 449 SUPERFAMILY Retrovirus zinc finger-like domains 79 106 IPR036875 GO:0003676|GO:0008270
Mtr5g1893 449 PANTHER TRANSPOSON TY3-I GAG-POL POLYPROTEIN-LIKE PROTEIN 201 420 - -
Mtr5g1893 449 SUPERFAMILY Retrovirus zinc finger-like domains 35 80 IPR036875 GO:0003676|GO:0008270
Mtr5g1893 449 CDD RT_LTR 228 403 - -
Mtr5g1893 449 Gene3D HIV Type 1 Reverse Transcriptase, subunit A, domain 1 190 329 - -
Mtr5g1893 449 Gene3D Acid Proteases 108 189 IPR021109 -
Mtr5g1893 449 SUPERFAMILY DNA/RNA polymerases 187 423 IPR043502 -
Mtr5g1893 449 Pfam Reverse transcriptase (RNA-dependent DNA polymerase) 244 403 IPR000477 -
Mtr5g1893 449 Gene3D - 269 403 IPR043128 -
Mtr5g1893 449 SMART c2hcfinal6 43 59 IPR001878 GO:0003676|GO:0008270
Mtr5g1893 449 SMART c2hcfinal6 83 99 IPR001878 GO:0003676|GO:0008270
Mtr5g1893 449 SMART c2hcfinal6 65 79 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g1893 Mtr-Chr5 21812865 21814547 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g1893 40 145 C2H2 Transcription Factor Family AT5G20220 30.081 1.47e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g1893 - - cam:105852760 399.053