Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g1891 ATGAGTGACAAAGAAAAGTTTGAGGTGGATGGAAATGAGGAGGATCCTATGAGTTATTCTAGTGGTATGCCACCTGATTGGAGATTTGGTGCAAATTCATCTGTTGGGTTGGTTTCAATTGGGAATTCTATGAGTATGAATAGAGGGGATTTGATTGGTTCTTCATCATGTTCATCTGCCTCAATGGTTGATTCATTTAGTCCTAACTTTTGGGACCATTCCGCGAATTCGCAAAACTTGGGATTTTGTGACATTAATGGGAGTTCTTCAAATACAATTGGAATTAGGAAAGATGGGTTTGGTTTTGGAAGGGGTGGTCATGATCATGGAACACTTGAAATTGGTTGGAACCAGGCTAATGCTATGATGAAAGGGGATGGTTTTTTACCGAATGGACAAGGGGTTTTTCCTCAGAGTTTATCTCAGTTTCCTACTGATTCTGGTTTTATTGAAAGGGCTGCGAGGTTCTCGTGTTTTGGTGGAGGGAATTTCAGTGATGTGGTGAACGCTTATGGGGTTCCTCAATCCATGGCGATGTATGCCGGTTCAATTCATGGAACTAGGGATGCTCTTGCAGGCGTTGGACTTCGAGTAGCAAATGGAGGACCAACACAAGAGAGTGATGATCCGAATGTGGTTGAAGCAGCTACAAAAGGTGTGGTGTCACCATCTGTTGAGCAATTGGCTACTAGAGAAAGTCCTTTGAAGAATGATAAAAGCGAGGGTTGGGTTGGGTCTCAAGATGAAGGGAAGCAAGCTCTTGTTCAGAATGTTAATGATTCCGATGGAGGTGAATCGGGTGACGATGATGGTGGTCGTGGCGGACAAGATGGTTCCCCAATGTTGGAGGGTACTACTAGTGGAGAGCCTTCTATGAAAGGACTAAACTCGAAGAAAAGGAAAAGAAGTGGACAGGATGCTGATAATGATAAACCCAATGGAACTCAAGAACTACAAAATGAAGGTGCAAAGGACAACCCTGAGAACCAACAGAAGTGTGACCAACAACCAACTTCGACAATTAAGGCTTCTGGGAAGAATGCCAAACAGGGCTCTCAAAATTCTGATCCACCTAAGGAGGAATACATACATGTTAGGGCTCGCCGGGGTCAAGCAACAAACAGCCATAGCCTTGCAGAGAGGGTGAGGAGGGAAAAAATAAGTGAGAGGATGAAGTTTCTTCAAGAACTTGTGCCTGGATGCAGCAAGGTCACTGGTAAGGCAGTGATGCTGGATGAAATCATCAACTATGTACAGTCACTTCAACGACAAGTTGAGTTTTTGTCTATGAAACTTGCAACAGTTAATCCACGGCTGGATTTCAATATTGAAAGCCTTCTTGCTAAAGATGTTCTTCACCAACGGCCTGGTCCTTCGTCCACACTAGGATTTCCTCTAGAGATGTCAATGAATTTTCCTCCATTACATCCATCTCAACCAGGGATGATTCAGTCAGTGATTCCAAACATGGCAAACCCGTCCGATATCCTTCGAAGAACTATTCATACACAGTTAACACCGTTGAGTGGAGGATTCAAGGAGCCAAATCAGATGCCTGATGTGTGGGCGGACGAGCTTCACAATGTTGTACAAATGAGCTTTGCAACAACCGCTCCCATGAGTAGCCAAGATGTGGATGGTACCACGGCAGCAAATCAGATGAAAGTTGAACTTTGA 1677 0.4407 MSDKEKFEVDGNEEDPMSYSSGMPPDWRFGANSSVGLVSIGNSMSMNRGDLIGSSSCSSASMVDSFSPNFWDHSANSQNLGFCDINGSSSNTIGIRKDGFGFGRGGHDHGTLEIGWNQANAMMKGDGFLPNGQGVFPQSLSQFPTDSGFIERAARFSCFGGGNFSDVVNAYGVPQSMAMYAGSIHGTRDALAGVGLRVANGGPTQESDDPNVVEAATKGVVSPSVEQLATRESPLKNDKSEGWVGSQDEGKQALVQNVNDSDGGESGDDDGGRGGQDGSPMLEGTTSGEPSMKGLNSKKRKRSGQDADNDKPNGTQELQNEGAKDNPENQQKCDQQPTSTIKASGKNAKQGSQNSDPPKEEYIHVRARRGQATNSHSLAERVRREKISERMKFLQELVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRLDFNIESLLAKDVLHQRPGPSSTLGFPLEMSMNFPPLHPSQPGMIQSVIPNMANPSDILRRTIHTQLTPLSGGFKEPNQMPDVWADELHNVVQMSFATTAPMSSQDVDGTTAANQMKVEL* 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g1891 558 MobiDBLite consensus disorder prediction 1 24 - -
Mtr5g1891 558 PANTHER BHLH TRANSCRIPTION FACTOR 12 557 - -
Mtr5g1891 558 MobiDBLite consensus disorder prediction 294 308 - -
Mtr5g1891 558 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 371 421 IPR011598 GO:0046983
Mtr5g1891 558 MobiDBLite consensus disorder prediction 309 357 - -
Mtr5g1891 558 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 369 440 IPR036638 GO:0046983
Mtr5g1891 558 CDD bHLH_AtBPE_like 361 446 - -
Mtr5g1891 558 Gene3D - 368 442 IPR036638 GO:0046983
Mtr5g1891 558 SMART finulus 377 427 IPR011598 GO:0046983
Mtr5g1891 558 Pfam Helix-loop-helix DNA-binding domain 374 422 IPR011598 GO:0046983
Mtr5g1891 558 MobiDBLite consensus disorder prediction 218 358 - -
Mtr5g1891 558 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 12 557 IPR024097 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g1891 Mtr-Chr5 21761581 21765459 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g1891 1 534 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68920 42.541 2.86e-112 341
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mtr5g1891 HLH 6.3e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g1891 - - lang:109340340 767.689
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g1891 5 21761581 21765459 Mtr5g1891 5 21761581 21765459 ECH