Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g1875 ATGGTATCAAAAACAAGAACCTATATGATTAATGTTGCTATCATAGTAGCATTATTCATGGTCAATGTTGCATTATCAGATGACACAATTCCAGTTCCTGCTAACAGAGCCCAAGTAGATTCATGGTTTAATACGAATGTAGGTCCATTAGAACAGAGAAAAAGTACCCTTGATCCTGCATTGGTGACTGCAGAAGCTGGTGCTAAAGTTATTAAAGTAATGCAAGATGGTAGTGGTGATTTCAAAACCATCACCGACGCAATTAATAGCATACCTACCGGAAACACCGTACGTGTGATTGTGAACATTGGTGGTGGAAGTTATAACGAGAAAATCAAAATTGATAGGACAAAACCTTTCGTTACATTATATGGGGCACCCGGAAATATGCCAAATTTAACATATGGTGGAACTGCAAAACAATATGGCACAGTTGATAGTGCTACATTGATTGCCGAATCAGATTATTTTGTAGCTGCTAACATCCTCGTATCGAATTCTGCACCAAGGCCGGATGGAAAAACCGCGGGTGGTCAAGCAGTTGCATTGAGAATTTCTGGTGACAAAGCAGCGTTCTATAATTGTAAGTTCTTCGGATTCCAGGACACAATTTGTGATGATAGACATAATCATATTTTTAAAGATTGCGTAATTCAAGGCACTGTGGATTTCATTTTTGGAAGTGGGACGTCTCTATATTTGAAAAGTGAATTAAGAGCACTTGATGATACTGGGCCAACAGTGATAGTAGCACAAGCAAGAAAAACTGCATCAGATGCTGATTTATACTCATTTGTGCATTGTGATATTACTGGAACTGGATCTTCCACTTTCTTAGCTAGGGCATGGATGACTTATCCCAAAATTATCTATGCTTACTCAACTATGACCAATGTTGTTAATCCCAAAGGGTGGGATAACGCCATGCACCCTGAATTTGACAAAACTTCATACTTTGGAGAATATCAGAACACAGGACCAAAGTCAGATCCTAAAGGGCGTGCAAGTGTTGCAAAGCAACTAACTGAAGCAGAGGTTAAACCTTTCATTACACTTGGAATGATTCAAGCATCTAAATGGCTCCTTCCTCCTCCAAAAGTCTAA 1104 0.3913 MVSKTRTYMINVAIIVALFMVNVALSDDTIPVPANRAQVDSWFNTNVGPLEQRKSTLDPALVTAEAGAKVIKVMQDGSGDFKTITDAINSIPTGNTVRVIVNIGGGSYNEKIKIDRTKPFVTLYGAPGNMPNLTYGGTAKQYGTVDSATLIAESDYFVAANILVSNSAPRPDGKTAGGQAVALRISGDKAAFYNCKFFGFQDTICDDRHNHIFKDCVIQGTVDFIFGSGTSLYLKSELRALDDTGPTVIVAQARKTASDADLYSFVHCDITGTGSSTFLARAWMTYPKIIYAYSTMTNVVNPKGWDNAMHPEFDKTSYFGEYQNTGPKSDPKGRASVAKQLTEAEVKPFITLGMIQASKWLLPPPKV* 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g1875 367 ProSitePatterns Pectinesterase signature 2. 218 227 IPR033131 -
Mtr5g1875 367 PANTHER PECTINESTERASE 63-RELATED 36 362 - -
Mtr5g1875 367 Pfam Pectinesterase 71 353 IPR000070 GO:0030599|GO:0042545
Mtr5g1875 367 Gene3D - 66 363 IPR012334 -
Mtr5g1875 367 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 36 362 - -
Mtr5g1875 367 SUPERFAMILY Pectin lyase-like 67 361 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g1875 Mtr-Chr5 21356978 21359205 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g1875 11 367 Carbohydrate Esterase AT1G69940 56.389 2.58e-149 424