Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g1871 ATGAGAAGAGAGGAAGAGGCCATGGAGTTGGAAAACCGTACAACAAGGACAAAGGAAATAAGAGAGAAGCCGGTGGGGGCTCTAAGCCGAATTTGGCGGATGTCAAGTGCTACAAGTGTGGAACTATGGGCTATTATGCCAATGATTGTAAGAAGGACATTAATTGTCACAAGTGTGGGAAAGCGGGTCACAAAGGCTTTTGAATGCAAGGGTGTTGCAAATGATGTTACTTGCTACAATTGTGGAGAGAAGGGTCATATCAGTACTAAGTGTACCAAGCCGAAGAAGGCGGCGGGAAAAATGTTTTCTTTGAATACGGAGGAAGTGGAGCAGCCGGATTATCTTATCCGAGAAATGTTCCATGAGATACCAATTCTAAGGCAGGAAAGTCTTCGTCTTGAATTGGAAATTCAACGTTATCTTGGAGATGACATGAAGGCTTTACGGTTTGATGACTTGACTAAAATTGAACATGAATTAGAAATATCTCTTGCTAAAGTTCGAAAGCGCCAGAATGAGCTCATGCAGCAGCAAATTGATAATATGATCAGGAAGGAAAGAATCTTGCAAGATGAAAATATCAATTTATCCAGTCATGCCAAACATGGGTGTAATGGATGA 621 0.4155 MRREEEAMELENRTTRTKEIREKPVGALSRIWRMSSATSVELWAIMPMIVRRTLIVTSVGKRVTKAFECKGVANDVTCYNCGEKGHISTKCTKPKKAAGKMFSLNTEEVEQPDYLIREMFHEIPILRQESLRLELEIQRYLGDDMKALRFDDLTKIEHELEISLAKVRKRQNELMQQQIDNMIRKERILQDENINLSSHAKHGCNG* 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g1871 206 Pfam K-box region 118 198 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mtr5g1871 206 Coils Coil 172 192 - -
Mtr5g1871 206 Pfam Zinc knuckle 77 93 IPR001878 GO:0003676|GO:0008270
Mtr5g1871 206 SMART c2hcfinal6 77 93 IPR001878 GO:0003676|GO:0008270
Mtr5g1871 206 PANTHER PROTEIN TRANSPARENT TESTA 16-LIKE ISOFORM X1 117 197 - -
Mtr5g1871 206 PANTHER SERUM RESPONSE FACTOR HOMOLOG 117 197 - -
Mtr5g1871 206 SUPERFAMILY Retrovirus zinc finger-like domains 73 101 IPR036875 GO:0003676|GO:0008270
Mtr5g1871 206 ProSiteProfiles K-box domain profile. 116 206 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mtr5g1871 206 Gene3D - 4 106 - -
Mtr5g1871 206 ProSiteProfiles Zinc finger CCHC-type profile. 78 93 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g1871 Mtr-Chr5 21291101 21292786 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g1871 104 196 MADS-box Gene Family AT5G23260 38.947 7.44e-15 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g1871 - - gmx:100783876 111.309