Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g1864 ATGAAAGCAGGGAAAGTTAATCATGAAGAAGATGAGTACGATGATGATGAGTTTAATTCTAACAAAAAACAAGCTACTTCCTCTGTCCCTAACACCAACAAAGATGGGAAAGCTACTGATAAGGCTAGTGTGATAAGATCGAAACATTCTGTAACGGAGCAGCGGAGAAGAAGCAAGATAAATGAGAGATTCCAAATATTGAGGGATCTCATACCTCAATGCGATCAAAAGAGGGACACAGCTTCGTTCTTATTAGAGGTGATTGAGTATGTTCAGTACTTACAGGAGAGGGTACAAAAATATGAAGGCTCATATCAAGGTTGGAGTCAAGAACCGTCGAAGTTGATGCCATGGAGAAATAGCCATTGGCGTGCCCAAAATTTTGTCGGTCAACCTCCAATTGTAAAGAATGGTTCAGGTCCAGTATTACCATTTCCCGGAAAGTTTGATGAAAATAGTGTTGGTATCTCTCCAACGATGCTTAGTGGCTCCCATAATATGATAGATCACGATCCGACTCGGGATATTGTCGGCAAGACGGCGGAGAGGCAACCTGATTTGGCGAGCAAGGGAATTCCTCTGCCTATGGCTATGCATGCAAACATGTCTGTTCCTGTCAGAAGTGATGGTGTACTTTCCCATCCTCTTCAGGGAACTGTTTCCGATGCACAATCAACTGAATGTCCCACAACGAGTGAACAACTCAACCAGCAGGATGATCTTACAGTTGAAGGAGGGACAATTAGCATCTCGAGTGTATACTCCCAAGGGCTGTTGAACAATCTGACTCAAGCGCTACAGAGTGCTGGGTTAGATCTGTCAAAGGCCAACATTTCAGTTCAAATTGATCTTGGGAAGCGTGCAAACAAAGATCCAAGCGGCACAGCCTCATCTCCCAAGAATCATGATAACCCTCTTTGTTGCAATCAATCATTTGCACATTTTAGAGATGGTGGCAATAGAGAAGACTCAGATCAAGCTCAAAAAAGAATGAAAACATACAAGTGA 1008 0.4296 MKAGKVNHEEDEYDDDEFNSNKKQATSSVPNTNKDGKATDKASVIRSKHSVTEQRRRSKINERFQILRDLIPQCDQKRDTASFLLEVIEYVQYLQERVQKYEGSYQGWSQEPSKLMPWRNSHWRAQNFVGQPPIVKNGSGPVLPFPGKFDENSVGISPTMLSGSHNMIDHDPTRDIVGKTAERQPDLASKGIPLPMAMHANMSVPVRSDGVLSHPLQGTVSDAQSTECPTTSEQLNQQDDLTVEGGTISISSVYSQGLLNNLTQALQSAGLDLSKANISVQIDLGKRANKDPSGTASSPKNHDNPLCCNQSFAHFRDGGNREDSDQAQKRMKTYK* 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g1864 335 MobiDBLite consensus disorder prediction 39 57 - -
Mtr5g1864 335 MobiDBLite consensus disorder prediction 291 308 - -
Mtr5g1864 335 MobiDBLite consensus disorder prediction 1 57 - -
Mtr5g1864 335 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 44 94 IPR011598 GO:0046983
Mtr5g1864 335 SMART finulus 50 100 IPR011598 GO:0046983
Mtr5g1864 335 CDD bHLH_AtBIM_like 43 119 - -
Mtr5g1864 335 Pfam Helix-loop-helix DNA-binding domain 46 95 IPR011598 GO:0046983
Mtr5g1864 335 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 45 116 IPR036638 GO:0046983
Mtr5g1864 335 MobiDBLite consensus disorder prediction 316 335 - -
Mtr5g1864 335 Gene3D - 41 115 IPR036638 GO:0046983
Mtr5g1864 335 MobiDBLite consensus disorder prediction 22 38 - -
Mtr5g1864 335 PANTHER TRANSCRIPTION FACTOR BIM2 1 333 - -
Mtr5g1864 335 PANTHER BES1-INTERACTING MYC-LIKE PROTEIN 1 333 IPR044295 GO:0003700|GO:0006351|GO:0046983
Mtr5g1864 335 MobiDBLite consensus disorder prediction 287 335 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g1864 Mtr-Chr5 21132306 21140175 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g1864 1 333 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G69010 53.293 2.04e-115 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mtr5g1864 HLH 2.4e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g1864 - - gmx:100816055 543.502