Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g1848 ATGAGTAATGTAGAGAAGAAGGAGGCTTTAAGGAGAATGTTAGAGAATGATGAAGAAACTGATAAAGATCCTTCTTCTGCTGATCTGAGAAAGAAACGTGGCAGAAAGAAAAAAGTGAAGATGGAAACAGAAAATGTTGTGAAGAAGAAAGAAAAACGTGGTAGGAAAAGGAAGACAACAATTTCTGATGAAAATAATGCTGCCAAAGAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAAGAAAATTGTGGTAGGAAGAGAGAGATAATATTTAGTTCTGAAGCTGTAAAAAAGGAGGAAAATGGTGGTTTTGTGAAGAAGGAGAAGAAGGAGACTAGGAACAAGAAAGAAAGCAACAATGATCATGACATTGAAGCTTCCAAGTATATGCTGGAATACCTTCTTCCATATTTAAGACAATTAGATCTAGAACAAATGGCTGAGATGGAAATAGAAGCCAGACTACAAGGGCTCTCATCACTCTCTGAGCTAAAGATAAAAGGAGCATATTGCTCTAAAGATGAGTGTGCTTACTGTGACAACTGCCAGAGCTCGATATTTGACTACCACCGAAGTTGTGCAAAATGCTCTTTTGACCTTTGTCTTCGCTGTTGCTATGAGCTTCGTCGTGGGGAGCTTCATGGTGATACTGGTCCAATTGAGTTTGAGTTAATCAACCGAGGGCAAGATTATCTGCATGGTGAGATAATAATCGGAGAAAATGAATCTCATACTGCCGCCCAGCCTGAGATTCTGGAACGGTCAAAATCTGAGTGGCATGTAGGCAGTGATGGTAACATTCGCTGTCCAAAAGCCAATAATGAAGATGATCATGGTTTCCTTGAGCTGAGACGAATGTTACCGCCAAATTGCATCTCTGAGTTGGTATGTAAAGCAAAACAACTTAAAGAAGCCGTTAATCTCGAAGATATCGAGGAGTCTCTTGATAATGTTTGCTCTTGTTTGAAACCTGTTAAGAAGGAAGATAATATACTGAATAACACAGGGAAGGCGGCTTTTTGTGAAGATTCCAGTGAAAACTTTTTATACTGTCCTAAGGCTATTGATCTACATAATCACGAGAAGGATTTAAGACATTTTCAATGGCACTGGAGAAAAGGTGAGCCTGTAATTGTCAACAACGTTCTTGAATCAAGTACATCTGGTTTAAGCTGGGAACCGATTCTCGCGTGGCGTGCATTTCATCAGATAAGTGATACCAATGACAATTCACTTTCGAATGTGAAGGCAATTGATTGCTTAAATTGGTGCCAGGGAGATATTAAAGTGGATGATTTCTTTACTGGGTATACAAATGGTCGCAAGGATAAGCTTGATTGGCCTCAGCTATTGAAATTGAATGATCGGCCTCCTTATTTATTCGAGAAAAATTTGCCTCGCCATTGCACCAAGTTCATATCCTCCTTGCCATATAAAGAATATACAGATCCTTTCAAAGGGGATCTTAACCTTGCTGCGAAGCTGCCTGATAATGTTCACGTGGGACCAAAAACATATATTGCTTATGGATTTCATCAGGAGCTTGGGCGGGGTGATTCTGTGACTAAGCTACATTGTGATATGTCTGATGTAGTAAATGTGTTGACTCATGTTGCTAAAGTGGAACTGGAAACTGTGAGCATTACTGCAATTAAAAAATTAACAGAAAAGCACCTTGAGCAAGACAAGAGGGAGCTACATGGTGATAATCAAGATGGAGAGACCAATGTTGACAGGCTTGATAATCGGTCTTCTTCCGTAATTGCTTCAGATGAGAAAAATAGCGTTGATGTCGTGGAAAATGGAAGTGGATTGTGTGATGCGAAGGTGGTTGATTCAGTTCATCAAGAAAATAGTTTAGATGGTGCTCACTGGGATATTTTTCGGAGAGAGGATGTGCCGAAATTGAAGGAATATCTGAAGAAGCATTCTGGAGAGTTCAGGCATATCTATTGTTCTCCTTTAAAGCAGGTTATTCACCCCATCCATGATCAGACGTTTTATCTTACTAACAATCATAAGAAGAGGCTTAAAGAGGAGTATGGAATTGAGCCGTGGAGTTTTGTTCAGAAGCTAGGAGATGCTGTTTTCATTCCAGCTGGTTGTCCACATCAAGTCAGAAATCTGAAGTCGTGCACCAAGGTTGCACTTGATTTTGTCTCTCCTGAAAATGTCGGTGAATGCTTCCGTTTGACAGAGGAAATCCGTAAACTTCCAGTAAATCACTATTTCACAGAGGACAAATTGCAGGTGAAGAAAATGATTATACATGCTATGCTTGATGTGGTAGAAAAGTTGGAGAAGGCAAGGTCTGAGGAAACCGATGTTCCTTCGTAA 2337 0.3988 MSNVEKKEALRRMLENDEETDKDPSSADLRKKRGRKKKVKMETENVVKKKEKRGRKRKTTISDENNAAKEKKKKKKKKKKENCGRKREIIFSSEAVKKEENGGFVKKEKKETRNKKESNNDHDIEASKYMLEYLLPYLRQLDLEQMAEMEIEARLQGLSSLSELKIKGAYCSKDECAYCDNCQSSIFDYHRSCAKCSFDLCLRCCYELRRGELHGDTGPIEFELINRGQDYLHGEIIIGENESHTAAQPEILERSKSEWHVGSDGNIRCPKANNEDDHGFLELRRMLPPNCISELVCKAKQLKEAVNLEDIEESLDNVCSCLKPVKKEDNILNNTGKAAFCEDSSENFLYCPKAIDLHNHEKDLRHFQWHWRKGEPVIVNNVLESSTSGLSWEPILAWRAFHQISDTNDNSLSNVKAIDCLNWCQGDIKVDDFFTGYTNGRKDKLDWPQLLKLNDRPPYLFEKNLPRHCTKFISSLPYKEYTDPFKGDLNLAAKLPDNVHVGPKTYIAYGFHQELGRGDSVTKLHCDMSDVVNVLTHVAKVELETVSITAIKKLTEKHLEQDKRELHGDNQDGETNVDRLDNRSSSVIASDEKNSVDVVENGSGLCDAKVVDSVHQENSLDGAHWDIFRREDVPKLKEYLKKHSGEFRHIYCSPLKQVIHPIHDQTFYLTNNHKKRLKEEYGIEPWSFVQKLGDAVFIPAGCPHQVRNLKSCTKVALDFVSPENVGECFRLTEEIRKLPVNHYFTEDKLQVKKMIIHAMLDVVEKLEKARSEETDVPS* 779
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g1848 778 Coils Coil 61 81 - -
Mtr5g1848 778 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 20 769 IPR045109 GO:0032454|GO:0033169
Mtr5g1848 778 MobiDBLite consensus disorder prediction 1 83 - -
Mtr5g1848 778 MobiDBLite consensus disorder prediction 1 30 - -
Mtr5g1848 778 Gene3D Cupin 349 745 - -
Mtr5g1848 778 SMART cupin_9 465 736 IPR003347 -
Mtr5g1848 778 MobiDBLite consensus disorder prediction 562 586 - -
Mtr5g1848 778 SUPERFAMILY Clavaminate synthase-like 358 763 - -
Mtr5g1848 778 Pfam JmjC domain, hydroxylase 610 719 IPR003347 -
Mtr5g1848 778 ProSiteProfiles JmjC domain profile. 472 736 IPR003347 -
Mtr5g1848 778 MobiDBLite consensus disorder prediction 562 579 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g1848 Mtr-Chr5 20802812 20808539 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Mtr5g1848 JmjC 1.6e-16 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g1848 K15601 - gmx:100780803 846.654