Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g1847 ATGACTAGGAAGAAGGTAAAACTTGCTTTTATCTCTAATGATTCGGCAAGAAAGGCAACCTACAATAAAAGAAAAAAGGGTATCATCAAGAAGGTTAGAGAACTCACCATTCTTTGTGGTATTCCAGCATGTGCTATAATTTCCAATCCTTTTAGTTCCAAAACAGAGGTGTGGCCAGATCTAGAGGGGGCCAGACAGGTGATTGAAAGGTACCAGAACTCATCAGTGAAAGATGAAACAAAGAATATGAACCAAGAGAGTTTCCTATTACAAAGGATTACTAAAGCCAGAGAGCAACTTCAAAAGCAAAGCCATGACAGTCGTGAGAAGGAGCTGAACAATCTTATGATTGGGTGCATGAAAAATAGAAAGCTACCAGATGAATTGTCTGTTTCTGAATTGAAAGACTTTGATAAGCTTATTGAGAAAATTCTGAAGGATATGGATAACAAGATTGATGCACTCGGTTGA 471 0.38 MTRKKVKLAFISNDSARKATYNKRKKGIIKKVRELTILCGIPACAIISNPFSSKTEVWPDLEGARQVIERYQNSSVKDETKNMNQESFLLQRITKAREQLQKQSHDSREKELNNLMIGCMKNRKLPDELSVSELKDFDKLIEKILKDMDNKIDALG* 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g1847 156 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mtr5g1847 156 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mtr5g1847 156 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mtr5g1847 156 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677|GO:0046983
Mtr5g1847 156 SUPERFAMILY SRF-like 1 83 IPR036879 GO:0003677|GO:0046983
Mtr5g1847 156 Coils Coil 90 110 - -
Mtr5g1847 156 Gene3D - 13 95 IPR036879 GO:0003677|GO:0046983
Mtr5g1847 156 ProSiteProfiles MADS-box domain profile. 1 47 IPR002100 GO:0003677|GO:0046983
Mtr5g1847 156 PANTHER MADS BOX PROTEIN 2 154 - -
Mtr5g1847 156 CDD MADS_SRF_like 2 84 IPR033897 GO:0000981|GO:0000987|GO:0045944
Mtr5g1847 156 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 2 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g1847 Mtr-Chr5 20794139 20794662 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g1847 1 155 MADS-box Gene Family AT5G26630 46.795 8.85e-42 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mtr5g1847 SRF-TF 2e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g1847 - - mtr:MTR_5g047560 245.358