Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g1846 ATGACTAGGAAGAAGGTAAAACTTGCTTTTATCTCTAATGATTCGGCAAGAAAGGCAACCTACAATAAAAGAGAAAAGGCATGTGCTATAATTTCCAATCCTTTTAGTTCCAAAACAGAAGTGTGGCCAGATCTAGAGAGGGCCAGACAGGTGATTGAGAGGTACCAGAACTCATCAGTGAAAGATGAAACAAAGAATGTGAACCAAGAGAGTTTCCTATTGCAGAGGATTACTAAAGCCAGAGAGCAACTTCAAAAGCAAAGTCATGACAGTCGTGAGAAGGAGATGAACAATCTTATGATTGGGTACATGAAAAATAGAAAGCTACCAGATGAATTGTGTGTTTCTGAATTGAAAGAATTTAATAAGCTTATTGAGAAAATTCCGAAGAACATGGATAATAAGATTGATGCACTCGGTTGA 423 0.3735 MTRKKVKLAFISNDSARKATYNKREKACAIISNPFSSKTEVWPDLERARQVIERYQNSSVKDETKNVNQESFLLQRITKAREQLQKQSHDSREKEMNNLMIGYMKNRKLPDELCVSELKEFNKLIEKIPKNMDNKIDALG* 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g1846 140 Coils Coil 74 94 - -
Mtr5g1846 140 SUPERFAMILY SRF-like 1 66 IPR036879 GO:0003677|GO:0046983
Mtr5g1846 140 PANTHER MADS BOX PROTEIN 2 138 - -
Mtr5g1846 140 SMART madsneu2 1 44 IPR002100 GO:0003677|GO:0046983
Mtr5g1846 140 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 2 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g1846 Mtr-Chr5 20787122 20787591 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g1846 1 139 MADS-box Gene Family AT5G26630 38.462 1.11e-26 97.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g1846 - - mtr:MTR_5g047560 278.485