Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g1844 ATGTCTTCCTCCTCTGATGATCATCCACGGATCTATGACGTGTTCATAAGTTTTAGAGGGGAGGATACTCGCAACACTATTGTTTCTCATCTCCATGCTGCACTCCAAAATTCAGGAGTCAACACTTTTCTTGATGATCAGAAGCTTAAAAAGGGAGAAGAGCTTGAACCAGCACTAAGGATGGCAATAGAACAGTCGAAGATATCTATTGTTGTTCTCTCACCGAACTATGCAGGATCTAGCTGGTGTCTTGACGAACTTGTACATATCATGGATTGCCGCGAAAGTTATGGCCGGACCGTTGTACCTGTATTTTACCGTGTTAACCCAACGCAAGTCCGTCATCAGACGGGTGATTTTGGAAAAGCCTTGGAGCTGACTGCAACAAAAAAAGAAGATCAACAACTGTCCAAGTGGAAGAGAGCACTCACAGAAGTTTCAAATATAAGCGGCTGGCGTTACAACATTTCGAGGAATGAAGGTGAACTAGTGAAGGGTATTGTTGAGTACATTTTGACAAAACTAAATATCTCATTGTTGTCTATTACTGAATATCCAATTGGATTGGAATCCCGTGTGCAACAAATTACCAAGATTATTGATGATCAATCATGGAAAGTCTGTATCATAGGGATATGGGGAATGGGTGGATCAGGCAAAACAACCACGGCCAAAGCTCTCTACAATCAAATCCATCGTAGATTCCAGGGTAGAACAAGTTTCGTTGAAAGTATTAGAGAAGTTTGTGATAATAATAGTAGAGGGGCTATTACTTTACAAAAACAACTTCTTTTAGATCTCTTTGAAATAAAGCAGAAGATTCATGGTGTTGCATTGGGGAAAAATAAAATCATGACAAGACTTCAGGGACAAAAGGTTTTGGTCGTACTCGATGATGTGACCAAGTCTGAGCAATTAAAAGCTCTGTGTGAAAATCCTAAGTTGTTAGGTTCGGGGAGTGTATTGATTATTACCACTAGAGATTTACGCCTTCTCAAGTCATTTAAAGTTGACCATGTCTACACCATGACTGAAATGGACAAACACCAATCCCTTGAACTTTTCAGTTGTCATGCTTTTCAACAACCAAACCCTAGAGACAAATTTAGCGAACTCTCTAGAAATGTAGTTGCTTATTGCAAAGGATTACCCCTGGCTCTTGAAGTCCTTGGACGTTACTTATCTGAGAGGACGGAACAAGAATGGAGATGTGCACTATCAAAATTAGAGAAAATTCCCAACAATGATGTGCAACAGATATTGAGAATCAGCTATGATGGTTTAGAAGATTATACGCAAAAGGACATATTTCTTGACATATGTTGTTTCTTCATTGGAAAGAACAGAGCTGATGTTACAGAGATACTTAATGGGTGTGGACTTCATGCTTATAGTGGAATATCTATTCTCATAGAGCGCAGCCTCGTAAAAGTCGAAAAGAATAACACGCTTGGAATGCACGATTTGCTCAGAGACATGGGAAGATCAATTGCTGGTGAAAGTTCAATCAAAGAGCCTGCAAAGCATAGTCGATTGTGGTTTCATGACGATGTGAACGATGTCTTGTTAAAAAAAAATGGTACAGAAATTGTTGAGGGATTGATTTTTGAGTTGCCAAGAACACATAGAACTAGATTCGGTACTAATGCTTTCCAGGAGATGAAAAAACTGAGGCTTTTAAAACTTGATGGTGTTGACCTCATCGGAGATTATGGTTTAATTTCCAAACAACTGAGATGGGTTGATTGGCAACGACCTACCTTCAAATGTATACCAGATGACTCTGATCTGGGAAATCTAGTTGTTTTTGAATTAAAACATAGCAATATTGGACAAGTTTGGCAGGAGCCCAAGCTGTTAGGCAAGCTGAAAATTCTCAATGTCAGTCATAATAAGTACTTGAAAATCACCCCAGACTTTTCAAAATTACCGAATCTAGAAAAGCTCATTATGAAGGACTGTCCGAGCTTGATTGAGGTACACCAGTCCATTGGGGACCTCAAGAATATCGTTCTGATAAATTTGAGGGACTGTAAAAGTCTTGCCAATCTCCCAAGAGAGATCTATAAATTGATATCGGTGAAAACTCTTATTCTTTCTGGTTGTTCAAAGATTGAGAAGTTGGAAGAAGATATAATGCAAATGGAATCCTTGACAGCTCTAATTGCAGCAAATACTGGTATCAAACAAGTGCCCTATTCAATAGCAAGATCAAAAAGCATTGCATATATATCACTATGTGGATACGAAGGATTATCACGTGATGTTTTTCCTTCTCTCATTTGGTCTTGGATGTCACCAACCAGAAATTCCCAGTCCCATATTTTTCCATTTGCAGGAAATTCATTGTCTCTAGTTTCTTTGGATGTAGAGAGTAATAATATGGAATATCAATCACCGATGCTTACCGTCCTATCAAAGCTTCGATGTGTTTGGTTTCAATGCCACTCAGAGAATCAACTTACTCAAGAATTAAGAAGATATATTGATGATCTATATGATGTGAATTTTACTGAGTTGGAAACAACATCACATGCACACCAAATCGAAAATCTTTCCTTGAAATTACTTGTGATTGGAATGGGAAGTTCCCAAATAGTCACAGATACTCTTGGCAAGAGCTTAGCACAGGGTTTGGCAACCAATTCAAGTGATTCTTTCCTTCCGGGTGACAATTATCCTTCTTGGTTAGCCTATAAATGCGAAGGATCTTCTGTACTTCTTCAAGTGCCTGAGGATAGTGGTTCTTGCATGAAGGGAATAGCTTTGTGTGTTGTTTATTCGTCAACACCTCAAAACCTGCTAATTGAATGTATCATTAGTGTCGTGATCATTAATTACACAAAGCTCACAATCCAGATTTACAAGCATGACACAATAATGTCTTTTAATGATGAAGATTGGGAAGGTGTAGTGTCAAATTTAAAAGTTGGTGACAATGTGGAGATTTTTGTAGCTATTGGGCATGGATTTACTGTTAAGGAGACGGCTGCGTATCTTATATATGGTCAGCCAACTGCTGTGGAAATTGAACCAATACCTGAAGTGGACGCGCAATCATCACCTGATGCGTAA 3075 0.388 MSSSSDDHPRIYDVFISFRGEDTRNTIVSHLHAALQNSGVNTFLDDQKLKKGEELEPALRMAIEQSKISIVVLSPNYAGSSWCLDELVHIMDCRESYGRTVVPVFYRVNPTQVRHQTGDFGKALELTATKKEDQQLSKWKRALTEVSNISGWRYNISRNEGELVKGIVEYILTKLNISLLSITEYPIGLESRVQQITKIIDDQSWKVCIIGIWGMGGSGKTTTAKALYNQIHRRFQGRTSFVESIREVCDNNSRGAITLQKQLLLDLFEIKQKIHGVALGKNKIMTRLQGQKVLVVLDDVTKSEQLKALCENPKLLGSGSVLIITTRDLRLLKSFKVDHVYTMTEMDKHQSLELFSCHAFQQPNPRDKFSELSRNVVAYCKGLPLALEVLGRYLSERTEQEWRCALSKLEKIPNNDVQQILRISYDGLEDYTQKDIFLDICCFFIGKNRADVTEILNGCGLHAYSGISILIERSLVKVEKNNTLGMHDLLRDMGRSIAGESSIKEPAKHSRLWFHDDVNDVLLKKNGTEIVEGLIFELPRTHRTRFGTNAFQEMKKLRLLKLDGVDLIGDYGLISKQLRWVDWQRPTFKCIPDDSDLGNLVVFELKHSNIGQVWQEPKLLGKLKILNVSHNKYLKITPDFSKLPNLEKLIMKDCPSLIEVHQSIGDLKNIVLINLRDCKSLANLPREIYKLISVKTLILSGCSKIEKLEEDIMQMESLTALIAANTGIKQVPYSIARSKSIAYISLCGYEGLSRDVFPSLIWSWMSPTRNSQSHIFPFAGNSLSLVSLDVESNNMEYQSPMLTVLSKLRCVWFQCHSENQLTQELRRYIDDLYDVNFTELETTSHAHQIENLSLKLLVIGMGSSQIVTDTLGKSLAQGLATNSSDSFLPGDNYPSWLAYKCEGSSVLLQVPEDSGSCMKGIALCVVYSSTPQNLLIECIISVVIINYTKLTIQIYKHDTIMSFNDEDWEGVVSNLKVGDNVEIFVAIGHGFTVKETAAYLIYGQPTAVEIEPIPEVDAQSSPDA* 1025
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g1844 1024 Gene3D - 10 176 IPR035897 -
Mtr5g1844 1024 SUPERFAMILY Toll/Interleukin receptor TIR domain 1 152 IPR035897 -
Mtr5g1844 1024 Gene3D - 177 340 IPR027417 -
Mtr5g1844 1024 SMART till_3 11 149 IPR000157 GO:0007165
Mtr5g1844 1024 ProSiteProfiles TIR domain profile. 10 175 IPR000157 GO:0007165
Mtr5g1844 1024 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 175 440 IPR027417 -
Mtr5g1844 1024 Gene3D Ribonuclease Inhibitor 535 859 IPR032675 -
Mtr5g1844 1024 SUPERFAMILY L domain-like 486 823 - -
Mtr5g1844 1024 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 15 1001 - -
Mtr5g1844 1024 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 15 1001 IPR044974 GO:0006952
Mtr5g1844 1024 Pfam NB-ARC domain 191 426 IPR002182 GO:0043531
Mtr5g1844 1024 PRINTS Disease resistance protein signature 209 224 - -
Mtr5g1844 1024 PRINTS Disease resistance protein signature 287 301 - -
Mtr5g1844 1024 PRINTS Disease resistance protein signature 380 394 - -
Mtr5g1844 1024 PRINTS Disease resistance protein signature 665 681 - -
Mtr5g1844 1024 Pfam TIR domain 12 181 IPR000157 GO:0007165
Mtr5g1844 1024 Gene3D - 345 429 IPR042197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g1844 Mtr-Chr5 20747527 20752339 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g1844 3 735 WRKY Transcription Factor Family AT4G12020 27.895 1.35e-68 249
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g1844 - - mtr:MTR_2g437560 1199.5