Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g1830 ATGGGAAGGAGTAAGGTGCAGCTTAAACGGATCGAAAACAAGATCAATCGACAGGTTACTTTCTCAAAAAGGAAAACCGGTTTGCTCAAGAAAGCTAAAGAAATATCTGTTCTTTGTGATGCTGAAGTTGCTTTGATTATTTTCTCTCATAATGGAAAGCTCTTTGATTATTCAACTGATTCATGCATGGAGCAGATACTGGAACGCCATGAAAGGTATGGCTATGCGGAGAGACTACTTGTAGGAAATGATACTGATACTCAGGAAAACTGGACGATGGAATACACAAGACTCAAGGCAAAGGTTGAGCTTTTGCAGAGAAACCACAGGCACTATATGGGAGAAGAGTTAGATTCAATGAGCCTTAAAGAGCTTCAATGTCTAGAGCAGCAGTTAGATACTGGTCTCAAGAACATACGTACCCGCAAAACTCAAGTCATGTATGAAGCCATTTCTGAACTTCAGAAAAAGGAGAAAGGGATTCAAGAGCAGAATAACATGCTCTCAAAGGAGATCAAGGAGAAGGAGAAGGTTGTTGCACAAGAGGCTGCTGCTCAATGGGAGCAGCCAAATTACAGGGTTGATACATGTTTCTTACTACAAGATCCCCTTCTTCCCGGTTTGAACATGGGTGGCAATTACGGTGAGGGAGCACAAGAATTGGGGAGGAACGGGCTGGACCTGACCCTGGAAACACTATATTATTAA 708 0.4237 MGRSKVQLKRIENKINRQVTFSKRKTGLLKKAKEISVLCDAEVALIIFSHNGKLFDYSTDSCMEQILERHERYGYAERLLVGNDTDTQENWTMEYTRLKAKVELLQRNHRHYMGEELDSMSLKELQCLEQQLDTGLKNIRTRKTQVMYEAISELQKKEKGIQEQNNMLSKEIKEKEKVVAQEAAAQWEQPNYRVDTCFLLQDPLLPGLNMGGNYGEGAQELGRNGLDLTLETLYY* 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g1830 235 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Mtr5g1830 235 SUPERFAMILY SRF-like 2 91 IPR036879 GO:0003677|GO:0046983
Mtr5g1830 235 PANTHER MADS-BOX TRANSCRIPTION FACTOR 1 219 - -
Mtr5g1830 235 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Mtr5g1830 235 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Mtr5g1830 235 Coils Coil 88 108 - -
Mtr5g1830 235 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mtr5g1830 235 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mtr5g1830 235 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Mtr5g1830 235 Coils Coil 151 171 - -
Mtr5g1830 235 Pfam K-box region 84 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mtr5g1830 235 PANTHER MADS BOX PROTEIN 1 219 - -
Mtr5g1830 235 CDD MADS_MEF2_like 2 73 IPR033896 GO:0000977|GO:0045944
Mtr5g1830 235 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mtr5g1830 235 Gene3D - 13 77 IPR036879 GO:0003677|GO:0046983
Mtr5g1830 235 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g1830 Mtr-Chr5 20434966 20441011 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g1830 1 234 MADS-box Gene Family AT1G26310 61.290 3.22e-100 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Mtr5g1830 K-box 4.3e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g1830 K09264 - gmx:100819745 342.043