Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g1827 ATGGAATCTTGGAGTTATATCCCTGAAGAGAGAAGCTATTTGTTTTCTGATGAAATGGATTTTTCACTTGATGCTTTTATGAGAAGTAGAAAACCCTTGGTTGAATGGGAAAACAAATCTTCATGTAACTTTGAGAGAGATGGATTTAATTCAGATAGAGAGGTAGTTAAAAGTATGGAATTTGTAGACTTGGGATTTCCTATGGAATCTTCTAGGACTGTTCGTGGTTCGGTTCAGACATCTAGCTGTGAGCTGGATAGTAATAATTCTAGTAAAAGAGAGAATTCCTCGGTCCATGTTATTGCTTTTGATTCATCTTTTGCGGAAGAAGATTCTGAGGCAAAGCATTTAAGTTCTCGAGTTGAATCGAAAAATCATGATTCTTCGTTGATTGATTTGAAGCTAGGGAGATTAGTAGATTGTCGAGGTGGGGGCAGTGATAGAGATGGAAAAACATTCACTTCTGAATCTATGCCGATACATCAAAACGTGTTAGCCAAGAGATCCCGCACTTCTAGCTTACCTGCTTTGGCTCCTGTATGCCAAGTTTATGGTTGTAATATGGATCTTAGCTCCTCGAAAGATTACCACAAAAGGCATAAAGTTTGTGATGTTCACTCCAAGACAGCTAAAGTTATCGTCAATGGTGTTGAACAGAGGTTTTGTCAGCAGTGCAGCAGGTTCCATCTAGTAGCTGAGTTCGACGATGGTAAGCGCAGTTGTCGCAGGCGTCTAGCTGGACACAATGAGCGCCGAAGGAAACCTCAGTTTGATTACATGACTAGTAAACAACACAAGATTCTTCAGTCATATCAAGGTACTAACAACTTTTCCTTTCAAGACATATTTCAAAGTGGAATCCTTTTCCCAGAAAAGCATGATCAAATCTCTCAAAGTGGACATATCAAACTGGAAGAGGACCCAATTTGCAGCCCTCAACTAGAAGCGCCCGCTACACACGGACACGAGTTATCTAGCCATGCTCTCTCTCTTCTGTCAGCTCAGTCACAGAATCCGTTGCACCAAGCAGCAGGAAATCCATCAGCTACTTCAAGTACTTTTTTTCGGGACATCCGCACGCAAGATAGAGGTGACCAAGTTTCTGAAACACCATTGATGACAAGCTCAATGAATAAACATGAACGAAATGAGTCTTTTCCATGTGGGATAAACTCTAAGGAAAATATCAAATCTGAACATGGTGGCACTGTTGATCTGTTTCAATTGTCTTCTAACCTTCAAAGGGTGGAGAAGCAAAGAAATTCTGTTTTGGTAAAATGGGAAAATGAAGATTGTTGTTTCTCAAACGTGTAA 1314 0.4033 MESWSYIPEERSYLFSDEMDFSLDAFMRSRKPLVEWENKSSCNFERDGFNSDREVVKSMEFVDLGFPMESSRTVRGSVQTSSCELDSNNSSKRENSSVHVIAFDSSFAEEDSEAKHLSSRVESKNHDSSLIDLKLGRLVDCRGGGSDRDGKTFTSESMPIHQNVLAKRSRTSSLPALAPVCQVYGCNMDLSSSKDYHKRHKVCDVHSKTAKVIVNGVEQRFCQQCSRFHLVAEFDDGKRSCRRRLAGHNERRRKPQFDYMTSKQHKILQSYQGTNNFSFQDIFQSGILFPEKHDQISQSGHIKLEEDPICSPQLEAPATHGHELSSHALSLLSAQSQNPLHQAAGNPSATSSTFFRDIRTQDRGDQVSETPLMTSSMNKHERNESFPCGINSKENIKSEHGGTVDLFQLSSNLQRVEKQRNSVLVKWENEDCCFSNV* 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g1827 437 MobiDBLite consensus disorder prediction 360 385 - -
Mtr5g1827 437 ProSiteProfiles Zinc finger SBP-type profile. 178 255 IPR004333 GO:0003677
Mtr5g1827 437 Pfam SBP domain 181 254 IPR004333 GO:0003677
Mtr5g1827 437 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 321 434 IPR044817 GO:0003677
Mtr5g1827 437 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 44 315 IPR044817 GO:0003677
Mtr5g1827 437 Gene3D - 175 242 IPR036893 GO:0003677|GO:0005634
Mtr5g1827 437 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 321 434 - -
Mtr5g1827 437 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 44 315 - -
Mtr5g1827 437 SUPERFAMILY SBT domain 179 260 IPR036893 GO:0003677|GO:0005634
Mtr5g1827 437 MobiDBLite consensus disorder prediction 365 382 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g1827 Mtr-Chr5 20384911 20389906 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g1827 1 421 SBP-box Gene Family AT1G69170 35.141 6.32e-63 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Mtr5g1827 SBP 2.4e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g1827 - - mtr:MTR_5g046670 870.922
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g1827 5 20384911 20389906 Mtr5g1827 5 20384911 20389906 ECH