Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g1812 ATGAACCATGAAGAGAAAGTTACCATGGACTTGGTTCCACCTTCTGATCAACACCTTTGTTACGTTCGTTGCAACTTCTGTAACACTGTCCTAGCTGTTGGCATACCATGCAAGAGGCTGCTAGATACTGTGACAGTGAAGTGTGGTCACTGCAGCAACCTCTCTTTTCTCACAACAAGACCACCAAGTTCCAAAAATCAAACTGTTGATCACACCCTCAGTCTCCAGGGGATTTACAGTAGCAAAAAGGGCCAACCATCATCTTCTTCTTCACCAACTACATCAACTGAGTCACTGTCCCCTAGACCACCGCCATTTGTTGTCAAACCACCTGAGAAGAAGCACCGTCTCCCATCTGCATATAACCGTTTCATGAAAGAAGAGATACAGCGCATCAAAGTAGCCAACCCTCAGATCCCACATCGAGAAGCTTTCAGTGCTGCTGCCAAAAATTGGGCTAGGTACATACCAAATTCACCAACCAGTTCAATTTCTGCAACTAAAAGAAACATTGAATGA 519 0.447 MNHEEKVTMDLVPPSDQHLCYVRCNFCNTVLAVGIPCKRLLDTVTVKCGHCSNLSFLTTRPPSSKNQTVDHTLSLQGIYSSKKGQPSSSSSPTTSTESLSPRPPPFVVKPPEKKHRLPSAYNRFMKEEIQRIKVANPQIPHREAFSAAAKNWARYIPNSPTSSISATKRNIE* 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g1812 172 MobiDBLite consensus disorder prediction 77 101 - -
Mtr5g1812 172 Pfam YABBY protein 16 155 IPR006780 GO:0007275
Mtr5g1812 172 Gene3D High mobility group box domain 107 158 IPR036910 -
Mtr5g1812 172 SUPERFAMILY HMG-box 98 153 IPR036910 -
Mtr5g1812 172 PANTHER PROTEIN CRABS CLAW 7 168 - -
Mtr5g1812 172 MobiDBLite consensus disorder prediction 77 114 - -
Mtr5g1812 172 PANTHER PROTEIN YABBY 6-RELATED 7 168 IPR006780 GO:0007275
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g1812 Mtr-Chr5 20193674 20196138 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g1812 1 171 C2C2-YABBY Transcription Factor Family AT1G69180 66.857 5.18e-65 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Mtr5g1812 YABBY 1.3e-51 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g1812 K25796 - gmx:100819079 278.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g1812 5 20193674 20196138 Mtr5g1812 5 20193674 20196138 ECH