Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g1768 ATGAATGGTCCAGCAGCAAAAGTAGATGATCAGCAAGAGCCTGAACCATGCACACCTCAGAACAATCATAAAGAGCCTGATCCGGACGCATCAGAACTAGTACAACTTTTGGACCGAAGTCAGCTTCCCAGATTAAACCCCTCCAACGCTGCTGATCAAGCCAATGCAGAAGCCACTATGAGAAAAGCACGAGTCTCAGTCCGTGCTAGATCAGAAGCCCACATGATCAATGATGGATGCCAATGGCGAAAATACGGACAAAAAATGGCTAAAGGAAACCCTTGTCCTCGTGCGTATTATAGATGCACAATGGCTCTTGGTTAA 324 0.463 MNGPAAKVDDQQEPEPCTPQNNHKEPDPDASELVQLLDRSQLPRLNPSNAADQANAEATMRKARVSVRARSEAHMINDGCQWRKYGQKMAKGNPCPRAYYRCTMALG* 108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g1768 107 SMART WRKY_cls 76 106 IPR003657 GO:0003700|GO:0006355|GO:0043565
Mtr5g1768 107 ProSiteProfiles WRKY domain profile. 71 107 IPR003657 GO:0003700|GO:0006355|GO:0043565
Mtr5g1768 107 Pfam WRKY DNA -binding domain 77 104 IPR003657 GO:0003700|GO:0006355|GO:0043565
Mtr5g1768 107 SUPERFAMILY WRKY DNA-binding domain 69 104 IPR036576 GO:0003700|GO:0006355|GO:0043565
Mtr5g1768 107 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 14 107 IPR044810 GO:0003700
Mtr5g1768 107 Gene3D WRKY domain 63 107 IPR036576 GO:0003700|GO:0006355|GO:0043565
Mtr5g1768 107 PANTHER WRKY TRANSCRIPTION FACTOR 31-RELATED 14 107 - -
Mtr5g1768 107 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g1768 Mtr-Chr5 19539162 19540096 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g1768 48 107 WRKY Transcription Factor Family AT4G04450 85.000 1.04e-31 113
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Mtr5g1768 WRKY 4.3e-12 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g1768 - - mtr:MTR_6g038890 227.639