Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g1692 ATGGAACAACAAGAAAACTCAACCAACAACACTAACCAAAACAAAACAACCACTTTCATCACAAAAAATGGAACAAACTCTCATCAACATCATCATTACTATAATCACTATCAACAGCAACAAGAACAACAACAGTATCAGAATCATCTTCAACAATATCAAACTCAACTTGGTTTCTACAACAACTACTACCAAAACAAGTATCAAAGATATTACCCTGCTCTTCTTCCTTTACCTTCACTTCAACAACTACCTTTCATTCCATCTTTCCCTCAAAATCTCAAAACCCATTTGCACAAACTTCCATGCAAACTCAATACTTCTCCTTCATCTGAATACAATCTTTCTCAACTTTCACTTGATCCTGCTCCAAAGGAACTTCAGAAACAAACTAGACCATCCTTTAAAGAAGTTGATGGGAAGAAGCTTATTTCAACAAGGAAGCCACATGAAGTAATTGTTGCAAGGAGACCAGATTCTGGTGGACAAGAAGGTCCTGTGATTTCTCTCCTTGCCAACCATTTTTTGGTGAAATTTGATTCATCACATAAAATATATCATTACAATGTTGAAATTACTCCTCATCCCTCTAAGGATGTTGCTAGAGAAATCAAGCATAAATTGGTAAATAACAATGCTGAGATTTTATCGGGCGCTCTGCCGGCATATGACGGGAGGAAAAATCTTTATAGTCCAATTGAATTCCAAAATGATAAGCTTGAGTTCTACATAGGCCTCCCGATCCCGACTAGCAAATCGACATCACCTTATGAGAAACGTGAACAACATAAACTTTTTCGGATAAATATCAAACTAGTCTCGAAGATTGACGGGAAGGGGTTGACTAATTACTTGAGCAAAGAAGGTGATGAAGGGATTCCGCTTCCGCAGGATTATCTACATGCTTTGGATGTAGTTTTGAGGGAAAGTCCGACTGAGAAATGTATACCTGTTGGAAGGTCATTCTATTCGAGTTCAATGGGGAGAAGCAAAGATATCGGTGGAGGAGCTGTTGGATTGAGAGGCTTCTTTCAGAGTCTTAGACCAACACAACAAGGACTTGCTCTCAATGTGGATTTCTCGGTAACTGCTTTCCATGAGAGTATAGGAGTTATTCCGTATTTGCAGAAACGTCTCGAGTTTCTTAGAGACCTTTCTCAGAGGCAGACAACTCAGCTAACTTGTGAAGAAAGGAAGGAAGTAGAGAAAACGTTGAAGAATATCAGAGTCTTTGTTTGCCATAGAGAAACTGTTCAGAGATACCGTGTCTATGGCTTAACTGAGGAGGCAACTGAAAATCTTTGGTTTCCTGATAGAGATGGAAAGAATCTGAGGCTTATGAGTTACTTTAAAGATCACTATAACTACGACATTCAATTCAGGAAGTGGCCATGCTTGCAAATTAGTAGAAGTAAACCTTGTTATCTCCCTATGGAGCTTTGTGTGATCTGTGAAGGACAGAAGTTCCTTGGGAAACTGTCGGATGATCAGACGGCAAAAATACTCAAGATGGGCTGTCAAAGACCAGGAGAACGGAAAGCCATCATCGAAGGCGTCATGAGAGGAAATGTTGGTCCTACCAGTGGTGATCAGGAAAAGGAATTTAAACTCCAAGTCTCAAGAGAAATGACAAAGTTGACTGGGAGAATTCTTTACCCTCCAAAACTAAAGCTTGGAGATGGAGGTCATGTGAGAAATCTGACTCCTTCACGTCATGATCGCCAGTGGAACTTTCTAGATGGCCATGTCTTTGAAGGAACTACAATTGAAAGGTGGGCACTAATAAGTTTTGGAGGCACACCTGAGCAAAAGTCTCATATCCCAAGATTCATAAACCAGTTAACTCAAAGATGTGAACAATTAGGCATTTTTCTCAACAAGAACACAATTATTAGTCCACAGTTTGAATCAATCCAAGTTCTTAACAATGTCACAGTTTTGGAATCTAAGCTCAAAAGAATCCAGAGTATTGCCTCAAACAATCTACAGCTTCTTATTTGTATAATGGAGAAAAAACACAAAGGGTATGCAGATTTGAAAAGAATTGCCGAGACAAGTGTCGGTGTTGTAAGCCAGTGCTGCTTGTATCCGAATCTCATCAAATTAAGTTCACAGTTTTTGGCTAATTTGGCTCTCAAGATCAATGCTAAAGTTGGTGGATGCACTGTTGCTTTGTACAACTCGCTTCCTTCTCAATTACCGCGTCTTTTCAACATCGACGAGCCGGTGATGTTCATGGGAGCCGACGTCACGCATCCTCATCCGCTCGACGATTCAAGTCCATCTGTCGCTGCTGTTGTTGGTAGCATGAACTGGCCAACAGCAAACAAATATATTTCAAGAATAAGGTCTCAAACACACAGGCAAGAAATTATTGCAGATCTCGGTGCAATGGTAGGAGAATTGCTTGAAGATTTTTATCAAGAAGTGGAAAAACTCCCAAACCGAATAATTTTCTTCCGAGACGGTGTTAGCGAAACTCAGTTTTACAAAGTTCTGCAAGAGGAACTACAATCAATAAAACAAGCATGTTCATCAAGGTTTCATGGTTATAAACCTTTTATTACTTTTGTAGTTGTGCAAAAGAGGCATCACACAAGGTTGTTTCCTGCCGACACCGATCAATCTTCGATGCACAACAATTTTCACTTTCAATATGAAAATATTCCACCAGGGACTGTGGTTGATTCAGTGATTACTCATCCAAAGGAATTTGATTTCTATCTATGTAGTCATTGGGGTGTGAAGGGAACAAGTAGGCCAACTCATTACCATGTCTTGTTGGATGAAAATAAGTTTACTTCAGATGAACTGCAAAAGCTTGTTTACAATTTGTGTTTTACTTTTGTTAGATGTACTAAGCCAATTTCATTAGTTCCTCCTGCATATTATGCACATTTAGCTGCATATAGAGGTAGACTCTACCTTGAGAGATCGGAGTCCTTAGGTTTGTTCAGAAGTGCTTCTACATTATCAAGAGCTGCTACGCCGAAGACACCACCTCTACCTAAACTTAGTGAAAACATCAAGAAGCTTATGTTTTACTGCTAG 3051 0.395 MEQQENSTNNTNQNKTTTFITKNGTNSHQHHHYYNHYQQQQEQQQYQNHLQQYQTQLGFYNNYYQNKYQRYYPALLPLPSLQQLPFIPSFPQNLKTHLHKLPCKLNTSPSSEYNLSQLSLDPAPKELQKQTRPSFKEVDGKKLISTRKPHEVIVARRPDSGGQEGPVISLLANHFLVKFDSSHKIYHYNVEITPHPSKDVAREIKHKLVNNNAEILSGALPAYDGRKNLYSPIEFQNDKLEFYIGLPIPTSKSTSPYEKREQHKLFRINIKLVSKIDGKGLTNYLSKEGDEGIPLPQDYLHALDVVLRESPTEKCIPVGRSFYSSSMGRSKDIGGGAVGLRGFFQSLRPTQQGLALNVDFSVTAFHESIGVIPYLQKRLEFLRDLSQRQTTQLTCEERKEVEKTLKNIRVFVCHRETVQRYRVYGLTEEATENLWFPDRDGKNLRLMSYFKDHYNYDIQFRKWPCLQISRSKPCYLPMELCVICEGQKFLGKLSDDQTAKILKMGCQRPGERKAIIEGVMRGNVGPTSGDQEKEFKLQVSREMTKLTGRILYPPKLKLGDGGHVRNLTPSRHDRQWNFLDGHVFEGTTIERWALISFGGTPEQKSHIPRFINQLTQRCEQLGIFLNKNTIISPQFESIQVLNNVTVLESKLKRIQSIASNNLQLLICIMEKKHKGYADLKRIAETSVGVVSQCCLYPNLIKLSSQFLANLALKINAKVGGCTVALYNSLPSQLPRLFNIDEPVMFMGADVTHPHPLDDSSPSVAAVVGSMNWPTANKYISRIRSQTHRQEIIADLGAMVGELLEDFYQEVEKLPNRIIFFRDGVSETQFYKVLQEELQSIKQACSSRFHGYKPFITFVVVQKRHHTRLFPADTDQSSMHNNFHFQYENIPPGTVVDSVITHPKEFDFYLCSHWGVKGTSRPTHYHVLLDENKFTSDELQKLVYNLCFTFVRCTKPISLVPPAYYAHLAAYRGRLYLERSESLGLFRSASTLSRAATPKTPPLPKLSENIKKLMFYC* 1017
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g1692 1016 SMART PAZ_2_a_3 376 516 IPR003100 GO:0005515
Mtr5g1692 1016 SMART Piwi_a_2 664 977 IPR003165 GO:0003676
Mtr5g1692 1016 Pfam Piwi domain 665 974 IPR003165 GO:0003676
Mtr5g1692 1016 CDD PAZ_argonaute_like 379 484 - -
Mtr5g1692 1016 Gene3D - 736 1016 IPR036397 GO:0003676
Mtr5g1692 1016 ProSiteProfiles PAZ domain profile. 376 485 IPR003100 GO:0005515
Mtr5g1692 1016 SUPERFAMILY PAZ domain 363 521 IPR036085 GO:0005515
Mtr5g1692 1016 ProSiteProfiles Piwi domain profile. 664 977 IPR003165 GO:0003676
Mtr5g1692 1016 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 110 1015 - -
Mtr5g1692 1016 Gene3D - 550 726 - -
Mtr5g1692 1016 Pfam N-terminal domain of argonaute 168 307 IPR032474 -
Mtr5g1692 1016 SMART DUF1785_2 316 368 IPR014811 -
Mtr5g1692 1016 Pfam PAZ domain 379 501 IPR003100 GO:0005515
Mtr5g1692 1016 Gene3D paz domain 362 489 - -
Mtr5g1692 1016 SUPERFAMILY Ribonuclease H-like 649 977 IPR012337 -
Mtr5g1692 1016 PANTHER PROTEIN ARGONAUTE 7 110 1015 - -
Mtr5g1692 1016 CDD Piwi_ago-like 533 976 IPR045246 -
Mtr5g1692 1016 MobiDBLite consensus disorder prediction 1 29 - -
Mtr5g1692 1016 Pfam Argonaute linker 1 domain 317 366 IPR014811 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g1692 Mtr-Chr5 18645592 18650186 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g1692 162 1016 Eukaryotic Initiation Factors Gene Family AT1G48410 41.723 0.0 635
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g1692 K11593 - gmx:100797755 1687.93