Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g1671 ATGGGTCACTTCAAGAAGGATTGTCCGGAGATTAATGGTAACTCCGCACAAATTGTCTCTGAGGGTTATGAGGACACAGGTCTACATCTAATTCAAGTTTGTGATTTGAAAATGAGTAGGGCTCTAGGGTTGAAGAAAGGACCATGGACGCCAAAAGAAGACAAGAAGCTTATAGCATATGTTACTCAACATGGCCATAGAAACTGGCATTCTTTGCCCTCTAGAGCAGTTCTTAGAAGATGTGGAAAGAGTTGCAGACTGAGGTGGATTAACTACATGATTCCAGATATAAAACGAGGAAACTTCAGCTCAGAAGAAGATCACAATATTATTCAGCTTCATGCACTTCTCGGGAACAAATGGTCCACAATAGCAGCTCTCCTGCCAAGGAGAACAGATAATGAAATAAAGAATCATTGGAACATTAACATCAAGAAAAGACTCATCAGAATGGGGATAGATCCCACCACTCACAAACCAAAATCCAACAACAACAACGATAATGATAATACTGCTATCAAACACGTGTCTCAATGGGAGCATGTTAGATTGGAAGCTGAAGCAAGATCAACAATGTTAGGAAAAACTCAAACTAAACTTTTACTATCTTCATCAAGTTCATCAATGTTATCACTAACCAAACACAACAATGCAATGTATAACATTTGTGCCATCATGCTTGCAAATAATGATGACTCTTTTTCTTCAACATCCACATTGAGCTTTTCTAATGAGCTTCCTTGTCTTACCAATGAGTTGAAGTTTGGAGAAGGCTTAGGATCATATGAGAGTGTTAGTAATAATAATATCATGGAAACTATTGCTCAAGATCATGTTTATGTGTCTAAATTATTGCAAGGTGATGATTATCTAATGGTGGCATTGGATGCATTTGGAGATTCTTTCAATGGTGACACTTTCATGGACTTCAATGGAAATGGAATGTACAATTTTGATGCAAGCTTGGCATTTTTTGAGTAA 981 0.3751 MGHFKKDCPEINGNSAQIVSEGYEDTGLHLIQVCDLKMSRALGLKKGPWTPKEDKKLIAYVTQHGHRNWHSLPSRAVLRRCGKSCRLRWINYMIPDIKRGNFSSEEDHNIIQLHALLGNKWSTIAALLPRRTDNEIKNHWNINIKKRLIRMGIDPTTHKPKSNNNNDNDNTAIKHVSQWEHVRLEAEARSTMLGKTQTKLLLSSSSSSMLSLTKHNNAMYNICAIMLANNDDSFSSTSTLSFSNELPCLTNELKFGEGLGSYESVSNNNIMETIAQDHVYVSKLLQGDDYLMVALDAFGDSFNGDTFMDFNGNGMYNFDASLAFFE* 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g1671 326 CDD SANT 48 93 IPR001005 -
Mtr5g1671 326 Gene3D - 45 98 - -
Mtr5g1671 326 SMART sant 45 95 IPR001005 -
Mtr5g1671 326 SMART sant 98 146 IPR001005 -
Mtr5g1671 326 ProSiteProfiles Myb-like domain profile. 94 144 IPR001005 -
Mtr5g1671 326 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 41 231 - -
Mtr5g1671 326 PANTHER TRANSCRIPTION FACTOR MYB106 41 231 - -
Mtr5g1671 326 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 44 93 IPR017930 -
Mtr5g1671 326 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 94 148 IPR017930 -
Mtr5g1671 326 Gene3D - 101 177 - -
Mtr5g1671 326 CDD SANT 101 141 IPR001005 -
Mtr5g1671 326 Pfam Myb-like DNA-binding domain 46 92 IPR001005 -
Mtr5g1671 326 Pfam Myb-like DNA-binding domain 99 141 IPR001005 -
Mtr5g1671 326 SUPERFAMILY Homeodomain-like 43 140 IPR009057 -
Mtr5g1671 326 ProSiteProfiles Myb-like domain profile. 41 93 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g1671 Mtr-Chr5 18392561 18404334 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g1671 42 189 MYB Transcription Factor Family AT5G15310 64.706 6.38e-69 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mtr5g1671 Myb_DNA-binding 6.8e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g1671 K09422 - gmx:100790887 254.988