Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g1660 ATGGGGAGGGTAAAGCTAAAGATAAAGAGGTTGGAGAACACAAATGGACGCCAAGCAACCTATGCCAAAAGAAAGAATGGAATAATGAAGAAAGCTAGTGAATTATCTATATTATGTGATATAGATATTATACTTCTAATGTTTTCTCCAGGTGGAAAACCTTCATTATGCACAGGGAGGCGCAGTAACTTTGAGGAGGTGATTGCAAAGTTTGCTCAACTAACCTCACAAGAAAGGGCAAAGAGGAAATTGGAGAGTCTTGAAGCACTAAAGAAAACATTTAAGAAGTTAGATCATGATGTGAATATACAAGACTTTTATGGTACAAGTAGTCAAACTGTTGAGGATTTGAGTGATCAAGCCAAGCATTTACATAAGCGTATCTCCGAAATTCATGAGAGATTAAGCAATTGGTCTGACATTGAAAAAATTAGTAGTGTGGATAAACTGGGACAGTTGGAAAATTCACTCAAGGAGTCTCTTAATCAAATTCAAACTCATAAGGAAAATGTACAAAAGCAACAACTGGCATCATTGCAATGCAATAATCAGTTCAATGAATTGCAGCTTCCCTACAAAATGAGTCATCAACAACATCTTCAATCTCTGTCTTGGATGGTTAATGGTGACAGCCAGAATTTAGTATTACCTGAAGACTCAAACTTGCTTCTCCACAAAGATGTAGAGGGTTCAACAAGCTCATCATTTGGAAGCTATGCAAGTTATCTTGGCTCAAGCACCAAAACAAACATGTCCAATTCTGGTCAAGAAAGCTGTATCATTAATGACATGAGCAATACTACTACTGCACCAGTGAGACTACAACAATTTAATGGACAAGTTCCATACATACCAAACAATTTCAACATTATGAATGATATGAAGCTCCAACCAGTTACAGGGATGAATAATCCACATGAAAATCAAGTAGATAATTATCATGTCAATGCAAATTTTGAAGCACCTAGACAAGGGTTTGATCAGTCTAATAATCATCATGGTTGGACTTCTAATTCAGGTCCTTGTGCTGTTAATATCTTTGATGAACATTTGTATCCTCAAGGAAATTTTCCACAAGTGCATTTTGGATTCACATAG 1098 0.3634 MGRVKLKIKRLENTNGRQATYAKRKNGIMKKASELSILCDIDIILLMFSPGGKPSLCTGRRSNFEEVIAKFAQLTSQERAKRKLESLEALKKTFKKLDHDVNIQDFYGTSSQTVEDLSDQAKHLHKRISEIHERLSNWSDIEKISSVDKLGQLENSLKESLNQIQTHKENVQKQQLASLQCNNQFNELQLPYKMSHQQHLQSLSWMVNGDSQNLVLPEDSNLLLHKDVEGSTSSSFGSYASYLGSSTKTNMSNSGQESCIINDMSNTTTAPVRLQQFNGQVPYIPNNFNIMNDMKLQPVTGMNNPHENQVDNYHVNANFEAPRQGFDQSNNHHGWTSNSGPCAVNIFDEHLYPQGNFPQVHFGFT* 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g1660 365 CDD MADS 2 54 - -
Mtr5g1660 365 Coils Coil 77 97 - -
Mtr5g1660 365 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mtr5g1660 365 Coils Coil 114 134 - -
Mtr5g1660 365 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 54 IPR002100 GO:0003677|GO:0046983
Mtr5g1660 365 Gene3D - 14 97 IPR036879 GO:0003677|GO:0046983
Mtr5g1660 365 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Mtr5g1660 365 Coils Coil 150 177 - -
Mtr5g1660 365 ProSiteProfiles MADS-box domain profile. 1 53 IPR002100 GO:0003677|GO:0046983
Mtr5g1660 365 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL65 ISOFORM X1 1 354 - -
Mtr5g1660 365 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mtr5g1660 365 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mtr5g1660 365 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Mtr5g1660 365 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 354 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g1660 Mtr-Chr5 18208398 18213607 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g1660 1 358 Type I MADS-box Gene Family AT2G03060 46.770 6.55e-101 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mtr5g1660 SRF-TF 1.9e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g1660 - - lang:109356063 523.087