Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g1657 ATGATCTCTTCACAAGAAAACCAATCTCTTTCTTCATCTTCTTCTTTTTCATTTCCAAATTCTTCTATGCATATGGTATATGCAGACCTTGGATCTCTCTCTATCAACACAAACTATGGTGTTGTTTCAAGTTTAGACAAAGAGAGTAAAAATAGCTATGCCTTTAAGAGCTTTGTGATGGAGAATGGTAGTGTCTTTCCATTTATGAGTGAGTGTCTTTCCAAAAGATATGAAGAACATAACATGGATGATGATATGGAAGGAAAAGGTTCTTATTGGAGTGAGGAAGGTGAAAATAGTGAGAGAATAAACCATAATAACACTAACTTCAATGATGAGTTAGAGAACCCTAATGGAAGTGGCAAAGAGGAAGATAATGGTCAATCTAGTAAATGTGCAAGAGGGCATTGGAGGCCTGCTGAAGATTCCAAGCTTAAAGAACTTGTTGCTCTTTATGGTCCTCAAAACTGGAATCTTATAGCTGAAAAGTTGGAAGGAAGATCAGGCAAGAGTTGTAGGCTGAGATGGTTCAACCAACTGGATCCAAGAATCAACAGAAGAGCATTTACAGAAGAAGAGGAAGAGAGACTAATGCAAGCACATAGAATTTATGGAAACAAATGGGCAATGATAGCTAGACTATTCCCAGGAAGAACAGACAATGCTGTGAAAAATCACTGGCATGTTATAATGGCAAGAAAGTACAGAGAACAATCTAATGCATACAGGAGAAGAAGATTGAGCCAAAATGTTTACAGCAGAATGGAGCAAAATCCAAGCTTCGGCCGCAGGGACACCGCAACAATGGAAACAGAATCATCACCACCTTATTTTCTCAATGGAGCCCCACTTGGGAATAGTATGTCCATTTTCCAATATGCTACTTCTTTCCAACATTGTGCTCATGGTGGTAGGGTTGAGTATGGTTTAAATGTTTTACCTCACATGAGTGGTGAGAGAGAAGCTATGCAAGGACCCCTACATGTTGGTTTGTATGCTCAACAAGCACCTTTTGATTACTTCTCTGTTGGTAGAAGCAATGACATGGTGGAAGAACCATTCAATCAGATCAGATACTGGGATGGCACTAAAGATGAATATCAACAACTAAATGGTTTCTACCATCATTATCCTCAACAATATTTGATGACAAAGCAAAATCAAAACAATCACAATTTTCACATTTTCTCAAATTCATCAGCAGCATCAGCAACACATCATAATGCAGAAAACAGTGAAAAAGTTCTGGTTGATGACACCCCAGATGCTGTTGAAACTCCTCAATTTTTTGACTTCCTTGGAGTAGGTGCTACATGA 1317 0.385 MISSQENQSLSSSSSFSFPNSSMHMVYADLGSLSINTNYGVVSSLDKESKNSYAFKSFVMENGSVFPFMSECLSKRYEEHNMDDDMEGKGSYWSEEGENSERINHNNTNFNDELENPNGSGKEEDNGQSSKCARGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRINRRAFTEEEEERLMQAHRIYGNKWAMIARLFPGRTDNAVKNHWHVIMARKYREQSNAYRRRRLSQNVYSRMEQNPSFGRRDTATMETESSPPYFLNGAPLGNSMSIFQYATSFQHCAHGGRVEYGLNVLPHMSGEREAMQGPLHVGLYAQQAPFDYFSVGRSNDMVEEPFNQIRYWDGTKDEYQQLNGFYHHYPQQYLMTKQNQNNHNFHIFSNSSAASATHHNAENSEKVLVDDTPDAVETPQFFDFLGVGAT* 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g1657 438 MobiDBLite consensus disorder prediction 84 137 - -
Mtr5g1657 438 ProSiteProfiles Myb-like domain profile. 129 180 IPR001005 -
Mtr5g1657 438 MobiDBLite consensus disorder prediction 103 126 - -
Mtr5g1657 438 SMART sant 185 233 IPR001005 -
Mtr5g1657 438 SMART sant 133 182 IPR001005 -
Mtr5g1657 438 ProSiteProfiles Myb-like domain profile. 181 231 IPR001005 -
Mtr5g1657 438 PANTHER MYB PROTEIN-RELATED 23 438 - -
Mtr5g1657 438 Gene3D - 134 185 - -
Mtr5g1657 438 Pfam Myb-like DNA-binding domain 134 180 IPR001005 -
Mtr5g1657 438 Pfam Myb-like DNA-binding domain 186 229 IPR001005 -
Mtr5g1657 438 SUPERFAMILY Homeodomain-like 133 227 IPR009057 -
Mtr5g1657 438 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 129 180 IPR017930 -
Mtr5g1657 438 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 181 235 IPR017930 -
Mtr5g1657 438 CDD SANT 137 178 IPR001005 -
Mtr5g1657 438 Gene3D - 187 258 - -
Mtr5g1657 438 MobiDBLite consensus disorder prediction 84 102 - -
Mtr5g1657 438 CDD SANT 188 228 IPR001005 -
Mtr5g1657 438 PANTHER MYB TRANSCRIPTION FACTOR 23 438 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g1657 Mtr-Chr5 18168549 18171609 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g1657 17 259 MYB Transcription Factor Family AT1G69560 53.333 1.01e-80 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mtr5g1657 Myb_DNA-binding 2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g1657 K09422 - gmx:100789305 420.624
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g1657 5 18168549 18171609 Mtr5g1657 5 18168549 18171609 ECH